PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900071.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-X1

Protein Properties

Length: 795aa MW: 89004.6 Da PI: 8.4779

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.6	1.8e-05	187	205	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_023900071.1 187 CG-HNCLLLCHPGPCPSCPK 205 .*************96 PP
2	zf-NF-X1	23.2	1.5e-07	239	256	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG HkC ++CH GpCppC XP_023900071.1 239 CGVHKCAQPCHDGPCPPC 256 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MTSTNDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI 60 QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCFAVFHL ACIQSWSRQS SDLSAARATT 120 RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN 180 RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG 240 VHKCAQPCHD GPCPPCAARA VYACRCGKEK QERECHDREF RCESACDRAL KCGKHRCEKG 300 CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT 360 CMETCRIVVI KSCRCGSLRK EVPCGTEMDQ KPPRCPKQCH IARLCRHGSN SKPHKCHYGA 420 CPPCRLICNE EYPCGHKCNL RCHGPISPPN PEFTLKPKKK KSIHQTEYTP GSPCPPCPEL 480 VWRSCVGQHV GADRMMVCSD KTQFSCDNLC GNPLSCGNHY CTKTCHALKN LSATPFQNER 540 SNSCEECHLP CQKERRPTCS HPCPLPCHPG ECPPCKVLVK RSCHCGSMVH VFECLYYNSL 600 SEKEQMAVRS CGGPCHRKLP NCTHLCPESC HPGACPSPDK CRKKVFVRCK CQTLKKEWFC 660 QDVQAAHRNA GSDPRDIPKN QYGIGLLPCN SACKSKVQVV DSELHSRKSK VMEEKEPETE 720 KNVPKRKRRR QQVQEGKQIS RLQKIVAAMK WLLLIVTLVV VLIAIANYGY KGLMWLSDWM 780 NEVEEQRQRR TYRRV

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MTSTNDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI  60
QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCFAVFHL ACIQSWSRQS SDLSAARATT  120
RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN  180
RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG  240
VHKCAQPCHD GPCPPCAARA VYACRCGKEK QERECHDREF RCESACDRAL KCGKHRCEKG  300
CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT  360
CMETCRIVVI KSCRCGSLRK EVPCGTEMDQ KPPRCPKQCH IARLCRHGSN SKPHKCHYGA  420
CPPCRLICNE EYPCGHKCNL RCHGPISPPN PEFTLKPKKK KSIHQTEYTP GSPCPPCPEL  480
VWRSCVGQHV GADRMMVCSD KTQFSCDNLC GNPLSCGNHY CTKTCHALKN LSATPFQNER  540
SNSCEECHLP CQKERRPTCS HPCPLPCHPG ECPPCKVLVK RSCHCGSMVH VFECLYYNSL  600
SEKEQMAVRS CGGPCHRKLP NCTHLCPESC HPGACPSPDK CRKKVFVRCK CQTLKKEWFC  660
QDVQAAHRNA GSDPRDIPKN QYGIGLLPCN SACKSKVQVV DSELHSRKSK VMEEKEPETE  720
KNVPKRKRRR QQVQEGKQIS RLQKIVAAMK WLLLIVTLVV VLIAIANYGY KGLMWLSDWM  780
NEVEEQRQRR TYRRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	725	730	KRKRRR
2	726	730	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein