PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900070.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-X1

Protein Properties

Length: 874aa MW: 97733.9 Da PI: 8.4275

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.4	2e-05	187	205	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_023900070.1 187 CG-HNCLLLCHPGPCPSCPK 205 .*************96 PP
2	zf-NF-X1	23.1	1.6e-07	239	256	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG HkC ++CH GpCppC XP_023900070.1 239 CGVHKCAQPCHDGPCPPC 256 ****************** PP
3	zf-NF-X1	18	6.1e-06	400	419	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_023900070.1 400 CGRHACKRRCCDGDCPPCSE 419 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence
MTSTNDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI 60 QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCFAVFHL ACIQSWSRQS SDLSAARATT 120 RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN 180 RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG 240 VHKCAQPCHD GPCPPCAARA VYACRCGKEK QERECHDREF RCESACDRAL KCGKHRCEKG 300 CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT 360 CMETCRIVVI KSCRCGSLRK EVPCYQDLAC ERKCQITRDC GRHACKRRCC DGDCPPCSEV 420 CGRKLRCKNH KCPAPCHRGA CAPCPVMVTI SCACSETHFE VPCGTEMDQK PPRCPKQCHI 480 ARLCRHGSNS KPHKCHYGAC PPCRLICNEE YPCGHKCNLR CHGPISPPNP EFTLKPKKKK 540 SIHQTEYTPG SPCPPCPELV WRSCVGQHVG ADRMMVCSDK TQFSCDNLCG NPLSCGNHYC 600 TKTCHALKNL SATPFQNERS NSCEECHLPC QKERRPTCSH PCPLPCHPGE CPPCKVLVKR 660 SCHCGSMVHV FECLYYNSLS EKEQMAVRSC GGPCHRKLPN CTHLCPESCH PGACPSPDKC 720 RKKVFVRCKC QTLKKEWFCQ DVQAAHRNAG SDPRDIPKNQ YGIGLLPCNS ACKSKVQVVD 780 SELHSRKSKV MEEKEPETEK NVPKRKRRRQ QVQEGKQISR LQKIVAAMKW LLLIVTLVVV 840 LIAIANYGYK GLMWLSDWMN EVEEQRQRRT YRRV

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence

MTSTNDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI  60
QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCFAVFHL ACIQSWSRQS SDLSAARATT  120
RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN  180
RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG  240
VHKCAQPCHD GPCPPCAARA VYACRCGKEK QERECHDREF RCESACDRAL KCGKHRCEKG  300
CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT  360
CMETCRIVVI KSCRCGSLRK EVPCYQDLAC ERKCQITRDC GRHACKRRCC DGDCPPCSEV  420
CGRKLRCKNH KCPAPCHRGA CAPCPVMVTI SCACSETHFE VPCGTEMDQK PPRCPKQCHI  480
ARLCRHGSNS KPHKCHYGAC PPCRLICNEE YPCGHKCNLR CHGPISPPNP EFTLKPKKKK  540
SIHQTEYTPG SPCPPCPELV WRSCVGQHVG ADRMMVCSDK TQFSCDNLCG NPLSCGNHYC  600
TKTCHALKNL SATPFQNERS NSCEECHLPC QKERRPTCSH PCPLPCHPGE CPPCKVLVKR  660
SCHCGSMVHV FECLYYNSLS EKEQMAVRSC GGPCHRKLPN CTHLCPESCH PGACPSPDKC  720
RKKVFVRCKC QTLKKEWFCQ DVQAAHRNAG SDPRDIPKNQ YGIGLLPCNS ACKSKVQVVD  780
SELHSRKSKV MEEKEPETEK NVPKRKRRRQ QVQEGKQISR LQKIVAAMKW LLLIVTLVVV  840
LIAIANYGYK GLMWLSDWMN EVEEQRQRRT YRRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	804	809	KRKRRR
2	805	809	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein