PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900055.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 667aa MW: 73103.2 Da PI: 6.8538

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.5e-08	270	290	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_023900055.1 270 PCPEFRK-GACPKGDSCEYAHG 290 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MCSGSKSKPC SSNFVMEGEF LMQNNGFFYD GSVLLELSAT DDLEAFKSEV EEKGFDVGKA 60 SFWYCRRIGS KKMAFEERTP LMIAAMYGST KVVKYIIETG KVDVNRVCGS DRVNALHCAV 120 AGGANSSLEI VKLLLDASAD ANCVNANGNK PIDLIAPASK SPSNSRRKAM ELVLKGDNSV 180 GEGDQFLTEE EELQRSVMPQ GAEKKEYPID ISLPDINNGI YGTDEFRMYT FKVKPCSRAY 240 SHDWTECPFV HPGENARRRD PRKYPYTCVP CPEFRKGACP KGDSCEYAHG VFESWLHPAQ 300 YRTRLCKDET GCARKVCFFA HKPEELRPVY ASTGSAMPSP KSHSVGALDM TVLSPLSLSS 360 SSLPMPTTST PPMSPLAAAS SPKGGNLWQN KVNSTPPALQ LPGSRLKTAL SARDLDFEME 420 LRGLESHVSQ QQQQQQLIDE IACLSSPSCW SKEYSRIGDL KPTNLDDVFG THDASMLSQL 480 QSPNAHQMRQ NMNQLRASYP TNLSSSPVRK PSSFGFDSSA AVAAAVMNSR SAAFAKRSQS 540 FIDRGAGTHR PGLTAAANSA SMMSSTRSDW SSPDGKLDWG IQGDELNKLK KSASFGFRNN 600 NVGTTLLPSA VDEPDVSWVN SLVKDVSHDN SGLFGAERQQ YNHGRGGHEL LPQWMEQLYI 660 EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MCSGSKSKPC SSNFVMEGEF LMQNNGFFYD GSVLLELSAT DDLEAFKSEV EEKGFDVGKA  60
SFWYCRRIGS KKMAFEERTP LMIAAMYGST KVVKYIIETG KVDVNRVCGS DRVNALHCAV  120
AGGANSSLEI VKLLLDASAD ANCVNANGNK PIDLIAPASK SPSNSRRKAM ELVLKGDNSV  180
GEGDQFLTEE EELQRSVMPQ GAEKKEYPID ISLPDINNGI YGTDEFRMYT FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYPYTCVP CPEFRKGACP KGDSCEYAHG VFESWLHPAQ  300
YRTRLCKDET GCARKVCFFA HKPEELRPVY ASTGSAMPSP KSHSVGALDM TVLSPLSLSS  360
SSLPMPTTST PPMSPLAAAS SPKGGNLWQN KVNSTPPALQ LPGSRLKTAL SARDLDFEME  420
LRGLESHVSQ QQQQQQLIDE IACLSSPSCW SKEYSRIGDL KPTNLDDVFG THDASMLSQL  480
QSPNAHQMRQ NMNQLRASYP TNLSSSPVRK PSSFGFDSSA AVAAAVMNSR SAAFAKRSQS  540
FIDRGAGTHR PGLTAAANSA SMMSSTRSDW SSPDGKLDWG IQGDELNKLK KSASFGFRNN  600
NVGTTLLPSA VDEPDVSWVN SLVKDVSHDN SGLFGAERQQ YNHGRGGHEL LPQWMEQLYI  660
EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein