PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900028.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 706aa MW: 78693.8 Da PI: 6.78

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	405	429	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C C+k+F rk+n + H +tH XP_023900028.1 405 YPCMyhGCSKRFGRKENVRAHVQTH 429 778888*****************99 PP
2	zf-C2H2	23	2e-07	435	457	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k+F r+++LkrHi H XP_023900028.1 435 FKCDLCDKTFVRQHDLKRHITIH 457 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MLPTNSTSSV QSRRNHHRRQ QSLEVPVLAN PLAANSRRNQ QGLRGHRRGL SLDQSLTTLN 60 SPVKLRPLHP QDKRLPTGHT GSQQVRTPLD PTNLGQLHTN TQHYQIKQET QQQSIAQPGY 120 QAPDFRSHLQ QQLNGVIHTP STPTLLQPTP ILPHQQHALQ ELQHHLDWYR NMYGASPNVN 180 VVAQPLFDAQ LAGTQMPLRT PVMPITLHPG SIQAQQQPVH SRSQNSSTPQ SHLHVMPNTP 240 QSYTQGWPSP PLSTSKHARN QNFQHEIVSI PDPIQPDFTQ TEISFADPSG YASSSYSSSH 300 VDPASPGRQA AHMPTLFEES AMPHEHQSLQ LEPSVDLLLS ATEGPQDFND PNFDFGASQI 360 SAVSPRQALL NQLGPDIPAS IVETGVQNCE VQQYIGEFDE VDRKYPCMYH GCSKRFGRKE 420 NVRAHVQTHL GDRQFKCDLC DKTFVRQHDL KRHITIHSDD RPHGCMCGQS FARHDALTRH 480 RQRGMCVGTL PGFEKDPADL PKRGRPKKQR PEMDERIEKA VKTRRNNRTK ANETVENELS 540 QSQHNYASSN YTASDRSFPV TPPDTSDAFD ADTFLNMAEV NQHTPPTSPA TGVSPAMLSQ 600 KSPNSCYDGW SSPENFEVNN NQLSAISAQS NPYEQTFSPP GESMTNSSVY GWSDNDLPME 660 NHDFNGTPHD TAAPSSVFDG SDGIINDHFK AGGTLADMLD QWLNDH

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MLPTNSTSSV QSRRNHHRRQ QSLEVPVLAN PLAANSRRNQ QGLRGHRRGL SLDQSLTTLN  60
SPVKLRPLHP QDKRLPTGHT GSQQVRTPLD PTNLGQLHTN TQHYQIKQET QQQSIAQPGY  120
QAPDFRSHLQ QQLNGVIHTP STPTLLQPTP ILPHQQHALQ ELQHHLDWYR NMYGASPNVN  180
VVAQPLFDAQ LAGTQMPLRT PVMPITLHPG SIQAQQQPVH SRSQNSSTPQ SHLHVMPNTP  240
QSYTQGWPSP PLSTSKHARN QNFQHEIVSI PDPIQPDFTQ TEISFADPSG YASSSYSSSH  300
VDPASPGRQA AHMPTLFEES AMPHEHQSLQ LEPSVDLLLS ATEGPQDFND PNFDFGASQI  360
SAVSPRQALL NQLGPDIPAS IVETGVQNCE VQQYIGEFDE VDRKYPCMYH GCSKRFGRKE  420
NVRAHVQTHL GDRQFKCDLC DKTFVRQHDL KRHITIHSDD RPHGCMCGQS FARHDALTRH  480
RQRGMCVGTL PGFEKDPADL PKRGRPKKQR PEMDERIEKA VKTRRNNRTK ANETVENELS  540
QSQHNYASSN YTASDRSFPV TPPDTSDAFD ADTFLNMAEV NQHTPPTSPA TGVSPAMLSQ  600
KSPNSCYDGW SSPENFEVNN NQLSAISAQS NPYEQTFSPP GESMTNSSVY GWSDNDLPME  660
NHDFNGTPHD TAAPSSVFDG SDGIINDHFK AGGTLADMLD QWLNDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-09	C2H2 family protein