PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023899994.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 632aa    MW: 69635 Da    PI: 6.5179
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023899994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3534.5e-1082576323374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + ++++A+ +s+g+ + a+++L+rl   ++p+g++ +Rl +y + AL++r+++    +    +p + +e   +e++ +++l++++sP++ +++++
  XP_023899994.1 257 QCIIDAATNISEGKSQVASEILTRLARFSNPKGNSEERLMSYWVYALKSRVNS----VE---NPPSVNELFYKEHVESTQLLYDMSPCFMLGFMA 344
                     67899***********************************************9....33...23333333499999******************* PP

            GRAS  98 aNqaIleavege...........ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                     aN aIlea+  e           +++H+iDfdi+qG+Q++ Ll+aLa+R++g+   ++iT+v++++  s+e+l ++g+ L++ A+++gv f f++
  XP_023899994.1 345 ANLAILEATLDEsdtksdnnnrgNKIHVIDFDIGQGGQYVYLLHALAARQNGKSfIVKITAVADNS--SQERLTKVGNALTQEAKKVGVCFAFKT 437
                     ********97766777778888899*************************887769********55..*************************** PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     ++  +l dl+ e+L ++p+E+l+Vn++++l+r+ desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r++e+++yy alfds+ea++
  XP_023899994.1 438 VTILKLGDLTRESLGCEPDESLVVNFAFKLYRMADESVSTDNPRDELLRRVKGLGPRVVILVEQEMNTNTAPFMARVTETCSYYGALFDSFEATM 532
                     *********************************************************************************************** PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368
                      r+++er+k+E+  lgr++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+++ ++ k+ l   +  + g++v +++g +++gW++r+L+
  XP_023899994.1 533 KRDNSERVKIEEG-LGRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSQNVSETLKAKLTAENrvNPGFTVTDQNGGVCIGWMGRTLT 626
                     *************.********************************************9999987766555789********************* PP

            GRAS 369 svSaWr 374
                     ++SaWr
  XP_023899994.1 627 VASAWR 632
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    
MASGFTGGGA PDFFTGRSTN QAPQPSYRSN LQGLFHDPST QIARHHQQQQ QLQLQQQPQQ  60
PHTMIGKRTL SDYQAHQIQN NQAGLNGLFS RYVKPRTFLH TSPISPLSPI DFSAASTTTT  120
SPLERYSLPI LQQFRPQPIS IGNRIVATNN NNNNAQALPG VPCVSTSSSH VSEQKIMNDR  180
LQELEKQLLD DDDDDVNEEE NDAVSVITNA NSEWSETIQN LISPTSQKPP ISLSPTSSSS  240
SSSSSSVASP GSTCSKQCII DAATNISEGK SQVASEILTR LARFSNPKGN SEERLMSYWV  300
YALKSRVNSV ENPPSVNELF YKEHVESTQL LYDMSPCFML GFMAANLAIL EATLDESDTK  360
SDNNNRGNKI HVIDFDIGQG GQYVYLLHAL AARQNGKSFI VKITAVADNS SQERLTKVGN  420
ALTQEAKKVG VCFAFKTVTI LKLGDLTRES LGCEPDESLV VNFAFKLYRM ADESVSTDNP  480
RDELLRRVKG LGPRVVILVE QEMNTNTAPF MARVTETCSY YGALFDSFEA TMKRDNSERV  540
KIEEGLGRKL GNSVACEGRD RVERCEVFGK WRARMGMAGF ELKPLSQNVS ETLKAKLTAE  600
NRVNPGFTVT DQNGGVCIGW MGRTLTVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-173GRAS family protein