PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023898633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 812aa MW: 90073.9 Da PI: 5.4293 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.9e-19 | 86 | 141 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r++L+++lgL+ rqVk+W qNrR+++k XP_023898633.1 86 KKRYHRHTARQIQEMEALFKECPHPDDKQRQKLSQELGLKPRQVKFWLQNRRTQMK 141 688899***********************************************998 PP | |||||||
2 | START | 164.4 | 8e-52 | 286 | 511 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la + +elvk+ + +ep+W + eng +vl +e ++ +++ea+r+s+vv+m++ +lv +ld + +W e ++ +a XP_023898633.1 286 LAASSINELVKMCQGNEPLWIRNN--ENGRDVLNLEEHARMfpwpmnlkqnsseFRTEASRDSAVVIMNSINLVDAFLDAN-KWVELFPsivsRA 377 678899****************99..********99998889***************************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 +t++vis+g g qlm+aelq+lsplvp R++ f+Ry++q ++g+w+ivd +ds ++ ++s+ R ++ pSg+li++++ng+s+vtw XP_023898633.1 378 KTVQVISPGdsgqasGSFQLMYAELQVLSPLVPtREVHFLRYCQQnAEEGTWAIVDFPIDSFHDNL-QPSFPRYKRWPSGCLIQDMPNGYSRVTW 471 ****************************************************************98.9*************************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh++++++ +h+++ v +g+a+ga++w+a lqrqce+ XP_023898633.1 472 VEHAEVEEKPVHQIFSDYVCNGMAFGAQRWLAVLQRQCER 511 **************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence |
MYGDCQVMST MGGNVVSSET LFSSPPIQNS NYNFMSSMPF QPFPSMIAKE ENGFLRGKDE 60 MESGSGSEQA EEKSANEQES EQPPKKKRYH RHTARQIQEM EALFKECPHP DDKQRQKLSQ 120 ELGLKPRQVK FWLQNRRTQM KAQQDRTDNA ILKAENENLR NENYRLQTAL RNVVCPNCGG 180 PCVIGGGMGL DEQKIHLENA RLRDELERVC CIASRYAGRP IEVMSPAPHL MPPSLDLDMN 240 MYSRHFPDPM ASCTEMIPVP MLPPETSHFP EGGLLLEEEK SIALELAASS INELVKMCQG 300 NEPLWIRNNE NGRDVLNLEE HARMFPWPMN LKQNSSEFRT EASRDSAVVI MNSINLVDAF 360 LDANKWVELF PSIVSRAKTV QVISPGDSGQ ASGSFQLMYA ELQVLSPLVP TREVHFLRYC 420 QQNAEEGTWA IVDFPIDSFH DNLQPSFPRY KRWPSGCLIQ DMPNGYSRVT WVEHAEVEEK 480 PVHQIFSDYV CNGMAFGAQR WLAVLQRQCE RVASLMARNI SDLGVLPSPE ARRNLMKLAQ 540 RMIRTFCVNI SSSSGLMWTA LSDSPDDTVR INTRKISELG QPNGLILCAV STTWLPYPHG 600 HVFDLLRDER RRSQLEVLSN GNSLHEVAHI ANGSHPGNCI SLLRINVASN SSQHVELMLQ 660 ESCTDQSGSL VVYTTVDVDS IQLAMNSEDP SCIPLLPIGF VIIPVRSTTD TTNTTSGDGN 720 PMPSSEEGNA STTSSPAGCL LTVVLQVVAS TIPSAKLNLS TVTAVNNHLC NTVHQINAAL 780 SSSSSTTTTS CPDNVSVVGS CTETTIATSP KQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |