PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023898511.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92372.9 Da    PI: 6.5039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023898511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_023898511.1 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START178.73.3e-561613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_023898511.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAnsGTIELL 254
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_023898511.1 255 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 349
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++ +l+++++
  XP_023898511.1 350 ESSTVLAQKTTMTALRQLRQ 369
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGKQ SAIDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQNTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANSGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MTALRQLRQI AHEVSQSTVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWSMMGNDGM  420
DDVTILVNSS PDKLMGLNLP FATGFPAVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAVKIGPCSL PGSRVGSFGG QVILPLAHTM EHEEFLEVIK LEGVGHSPED  540
AIMPREMFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEIGPAGNKA SNDYSANSGC VRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRTPLGT PEAQTLARWI CQSYRCYMSV ELLKSGNEGS  720
ESILKTLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein