PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897887.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 574aa MW: 63181.7 Da PI: 7.7754

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.6	6.5e-42	179	254	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_023897887.1 179 CQVYGCHKDLSSSKDYHKRHKVCEIHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 254 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MESWNCVSEG KDFESDETIL PANNSLSRSK NCLLGRELRT PCSFGNDLLV SSQQAVENQR 60 FGELGFPEMI GRQLNHNSTS EVVRSSKVGG EHVVNPVMSM PNGFSGEDDS TSKLSSSVAD 120 SNSRDSSFFD LNLGRLADIR DAHNSKFSKG TTILLSSSES SSPAKRVRAS GMHSQTSFCQ 180 VYGCHKDLSS SKDYHKRHKV CEIHSKTAKV IVNGIEQRFC QQCSRFHLLA EFDDGKRSCR 240 KRLAGHNERR RKPQGIHTGR AGRYLQSYNG SRYQGSPLTT TSFVCQEIPP SGLFQPEKYG 300 TSDWCRHIKI EGGSDYRPMT TFPITNGNQH SKSLFPTYNI EKQFPPFHDS GANTTTGSIF 360 SENASQYTHD IGGQNSSSRS FFQSASGSED FSVFDAASTA QGLSGISDSG CALSLLSSQS 420 QNSSSHSSGI PMARPLIMPG SHPHYGMSRV SEKFIGVSSQ ASPSGASNKF ISSEMNSAEE 480 NHLGHVFISD SSDAINLEIA DGIFQGSDFL HSSDRHSCES GPTIDLLQLS SELHRVEHQR 540 QSLQVKQEND AQQARQGERY HRMLQNIRQP KLKK

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MESWNCVSEG KDFESDETIL PANNSLSRSK NCLLGRELRT PCSFGNDLLV SSQQAVENQR  60
FGELGFPEMI GRQLNHNSTS EVVRSSKVGG EHVVNPVMSM PNGFSGEDDS TSKLSSSVAD  120
SNSRDSSFFD LNLGRLADIR DAHNSKFSKG TTILLSSSES SSPAKRVRAS GMHSQTSFCQ  180
VYGCHKDLSS SKDYHKRHKV CEIHSKTAKV IVNGIEQRFC QQCSRFHLLA EFDDGKRSCR  240
KRLAGHNERR RKPQGIHTGR AGRYLQSYNG SRYQGSPLTT TSFVCQEIPP SGLFQPEKYG  300
TSDWCRHIKI EGGSDYRPMT TFPITNGNQH SKSLFPTYNI EKQFPPFHDS GANTTTGSIF  360
SENASQYTHD IGGQNSSSRS FFQSASGSED FSVFDAASTA QGLSGISDSG CALSLLSSQS  420
QNSSSHSSGI PMARPLIMPG SHPHYGMSRV SEKFIGVSSQ ASPSGASNKF ISSEMNSAEE  480
NHLGHVFISD SSDAINLEIA DGIFQGSDFL HSSDRHSCES GPTIDLLQLS SELHRVEHQR  540
QSLQVKQEND AQQARQGERY HRMLQNIRQP KLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-47	SBP family protein