PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023897838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | GRF | ||||||||
Protein Properties | Length: 397aa MW: 43520.4 Da PI: 8.4895 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.6 | 1.5e-25 | 153 | 196 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_023897838.1 153 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 196 79***************************************987 PP | |||||||
2 | QLQ | 51.8 | 2.5e-18 | 82 | 118 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a+ vPpeLlq+i+k XP_023897838.1 82 SYFSLAQWQELELQALIYRYMLAGTAVPPELLQPIKK 118 79*********************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence |
MDFNLKQWRN HQHESEQQQQ QHSVKIPKLL LEPHQQQQQQ PQIQASASAL PLFVPEPNSK 60 ISSLSAYPDS TLATTRFPRM SSYFSLAQWQ ELELQALIYR YMLAGTAVPP ELLQPIKKSL 120 HISPYFLHHP LQHYPHFQPA LFQSGYWGRG AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC 180 ERHVHRGRNR SRKPVEIPTP MTSVTSTTTT TIAGCGGTFK ATTAVASGTP FALSGPSPSI 240 DLLHLNQSAI GSKTANKSGL FESQHEVSAD GKSDGHVLRH FFDDWPRSFQ ESDNAGSNSS 300 PMNSATCLSI SMPGNSSSDV SLKLSTGVGE EPGSRDSNAE SEQPQLNWAS GWATNHVSSM 360 GGPLAEALRS STSNSSPTSV LHQLPRGSAS ETSFVST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 2e-83 | GRF family protein |