PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023897376.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 682aa MW: 75509.3 Da PI: 6.4296

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023897376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.6e-23	124	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + + XP_023897376.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGGVWKFRHIYRGTPRRHLLTTGWSNFVNRKKLVAGDSIVFL--RAE 214 89**************************985444444..8999*****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023897376.1 215 NGDLCVGIRRA 225 8999**997 PP
2	Auxin_resp	110.2	2.2e-36	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF vk++ v++a+++++s GmRfkm fetedss++++ +Gt+++v+ +dpv+Wp+S+Wr+L+ XP_023897376.1 281 AATLATNGKPFEVVYYPRASTPEFFVKASVVRAAMEIHWSSGMRFKMPFETEDSSRISWfMGTISAVQVADPVHWPDSPWRLLQ 364 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MITVMDSVKE KPMRNSDKGL DSQLWHACAG GMVQMPPINS KVFYFPQGHA EHALGGNVDF 60 GNSRIPSLIP CRVNTIRYMA DPESDEVYAK LKLVPLRNNE LDFEDDGFLG ASGVDQGQEK 120 LVSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH GGVWKFRHIY 180 RGTPRRHLLT TGWSNFVNRK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGIEYLSGWN 240 QEAANCGSTF GVYSSFMRES KDSSKPMELG GKVRNESVVE AATLATNGKP FEVVYYPRAS 300 TPEFFVKASV VRAAMEIHWS SGMRFKMPFE TEDSSRISWF MGTISAVQVA DPVHWPDSPW 360 RLLQVAWDEP DLLQNVKCVN PWLVELVSNI PVMHIPTFSP PRKKMRLPQQ ADYSLISQFP 420 MPSFSNNLLH TSSPFCGFSD NIPAGIQGAR HAQFGISSED LHRNNKMHSS LFPIGFQQLD 480 HATTPRVPGG NFIDHAEKND ASCLLTMGNT TQSMKDNNKV KAPHIVLFGQ LIFTEEQISK 540 CCSGDTIGNS SSDMSPEKAA NFSDGSDSVL HQNVSLENSS DGGSPWYKDH RNNDLALEPG 600 HCKVFIESVD VGWTLDLSSL GSYEELYVKL AKMLRLESSQ ILLYQDALGA VKHAGEESFS 660 EFVKTARRLT VLTDSVSDNI ES

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MITVMDSVKE KPMRNSDKGL DSQLWHACAG GMVQMPPINS KVFYFPQGHA EHALGGNVDF  60
GNSRIPSLIP CRVNTIRYMA DPESDEVYAK LKLVPLRNNE LDFEDDGFLG ASGVDQGQEK  120
LVSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH GGVWKFRHIY  180
RGTPRRHLLT TGWSNFVNRK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGIEYLSGWN  240
QEAANCGSTF GVYSSFMRES KDSSKPMELG GKVRNESVVE AATLATNGKP FEVVYYPRAS  300
TPEFFVKASV VRAAMEIHWS SGMRFKMPFE TEDSSRISWF MGTISAVQVA DPVHWPDSPW  360
RLLQVAWDEP DLLQNVKCVN PWLVELVSNI PVMHIPTFSP PRKKMRLPQQ ADYSLISQFP  420
MPSFSNNLLH TSSPFCGFSD NIPAGIQGAR HAQFGISSED LHRNNKMHSS LFPIGFQQLD  480
HATTPRVPGG NFIDHAEKND ASCLLTMGNT TQSMKDNNKV KAPHIVLFGQ LIFTEEQISK  540
CCSGDTIGNS SSDMSPEKAA NFSDGSDSVL HQNVSLENSS DGGSPWYKDH RNNDLALEPG  600
HCKVFIESVD VGWTLDLSSL GSYEELYVKL AKMLRLESSQ ILLYQDALGA VKHAGEESFS  660
EFVKTARRLT VLTDSVSDNI ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein