PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023897036.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 620aa    MW: 70123.8 Da    PI: 8.3973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023897036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-1102486184374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lL++cA+ v+ ++ + a++lL+++++++sp gd +qRla+yf++AL+arla++   +y  ++++ ts   +++ l+a++l+  v+P+ ++s++ a
  XP_023897036.1 248 LLTQCAQYVAISNRKTANELLKQIRQHSSPLGDRNQRLAHYFANALEARLAGTRIPVYTPFESNGTS---VADYLKAFQLYITVCPFKRMSNFFA 339
                     79**************************************************888888766666666...************************* PP

            GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     Nq+I + +e    +++HiiDf+i +GlQWp+L+q L+  p+gp ++RiTg++ p++g   +e++eetg+rL++++++++vpfe+n+ +a+++e++
  XP_023897036.1 340 NQTIGKLAEARkaTTLHIIDFGILYGLQWPCLIQRLSIIPGGPLKIRITGIELPQPGfrPAERIEETGRRLENYCKRINVPFEYNA-IAQKWETI 433
                     ****888877655889****************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L+++++E ++Vn++ +l++++de+v+++ +rd vL+l+k+++P+++v+   +  +n++ Fl+rf eal yysalfd+++a++p +++ r  
  XP_023897036.1 434 RLEDLKIDRDELTVVNCMCRLKYIPDETVAINCPRDIVLNLIKRINPDLFVHGVVNGAYNAPFFLTRFREALFYYSALFDMFDATMPCKDHRRLQ 528
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+e +gr+++nv+aceg er+er et+ekW+ r  +aGF+++p++e+a+  ak  ++  + + + + ++ +++++gWk+r L ++S+W+
  XP_023897036.1 529 FEKERIGRDAMNVIACEGLERVERPETFEKWEVRTLRAGFRQLPIDEEAVLVAKKAVKSEYHKDFVIYKDGQWMLQGWKGRILHAISCWK 618
                     **********************************************************999888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MLQDSLALEA AEKSFYEVLG QEDHPLTDQN NECPDAPVAG NSRTHISNSY SVADNLIKSS  60
WSHDQGESNS FCIQTSLIDS QSENLLLPNS FSEMHSFAQV KGGMGIAVKS IRHGKYEVFD  120
LESIPPVPPK YTQGMVGKQE KSYTSPSGSR GNKNHQREYT DNVEEGRSNK HSLVDAGEVD  180
SELLEKFDKI LHFPGGDSES ASSALHKSGG NGGRKKLQHK SHSKGSHGKT TLSKNEGKKG  240
VIVDFWGLLT QCAQYVAISN RKTANELLKQ IRQHSSPLGD RNQRLAHYFA NALEARLAGT  300
RIPVYTPFES NGTSVADYLK AFQLYITVCP FKRMSNFFAN QTIGKLAEAR KATTLHIIDF  360
GILYGLQWPC LIQRLSIIPG GPLKIRITGI ELPQPGFRPA ERIEETGRRL ENYCKRINVP  420
FEYNAIAQKW ETIRLEDLKI DRDELTVVNC MCRLKYIPDE TVAINCPRDI VLNLIKRINP  480
DLFVHGVVNG AYNAPFFLTR FREALFYYSA LFDMFDATMP CKDHRRLQFE KERIGRDAMN  540
VIACEGLERV ERPETFEKWE VRTLRAGFRQ LPIDEEAVLV AKKAVKSEYH KDFVIYKDGQ  600
WMLQGWKGRI LHAISCWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-176GRAS family protein