PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023897035.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 709aa    MW: 79875.3 Da    PI: 5.5813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023897035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.51.3e-1143397073374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avss+d++ a++lL+++++++s+ gd +qRla+yf+ AL+arla+  ++   +++p  ++ ++ ++ l+a+k++  ++P+ ++s++ 
  XP_023897035.1 339 SLLTQCAQAVSSSDQRTANELLKQIRQHSSQFGDGNQRLAHYFADALEARLAG--TR--LSMHPIVSNGTSAADILKAYKVYIAACPFKRMSNFF 429
                     69***************************************************..33..3355555555569*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++  + ++++ r+HiiDf+i +G+QWp+L+q L++Rp+g+p+lRiTg++ p+sg   +e++eetg+rL++++++++vpfe+nv +a+++e+++
  XP_023897035.1 430 ANRTTKKLAQKAPRLHIIDFGILYGFQWPCLIQRLSERPGGAPKLRITGIELPQSGfrPTERVEETGRRLENYCKRFNVPFEYNV-IAQKWETIK 523
                     *******************************************************9****************************9.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     le+L+++++E ++Vn+ ++l++++de+v+++++rd+vLkl+k+++P+++ +   +  +n++ F++rf eal+++s+lfd+++a+lp e+  r  +
  XP_023897035.1 524 LEDLKIDRDELTVVNCLFRLKNIPDETVAMNNPRDTVLKLIKKINPDLFMHGVVNGTYNAPFFVTRFREALYHFSSLFDMFDANLPLEDPGRLRY 618
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+e++gre++nvvaceg er+er et+++W+ r  +aGF++vpl+++ ++++k  ++  + + + v+ + ++l++gWk+r ++++S+W+
  XP_023897035.1 619 EKEIVGREAMNVVACEGLERIERPETYKQWQVRNLRAGFRQVPLDQELVQKVKKTVKSEYHKDFVVDVDGQWLLQGWKGRIIYALSCWE 707
                     *********************************************************999888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MDTLLEELQS PEFMNENSFN HGSVTLRSKQ DLANRFKVNH EFSQEPFLPT NPLQDPGDDS  60
SPSSTVTSLD GDPADSGEIS NATLKYINEM LMEENLEAKP CMLQDCLALQ AAEKSFYEVL  120
GQKYPSHPCS DQNIGSPDGY FDGSSSVDSS NSYTITSADN LVESNWIYDQ GEFKSFSMQS  180
SAIDSSGYAS LLLDSFSERQ PVESHPHGNH EIIDLESSPS VSPKQTTDAA ENADMNRRQT  240
SPNGSSRRKN HQREDSDDLE EGRSNKQSVN YAGDSESLEM YDEVLLCPGD SKSCAIHDSS  300
RNGASKKLQQ NGDSGGSKGK TTRSKKQGNK GGEIVDFWSL LTQCAQAVSS SDQRTANELL  360
KQIRQHSSQF GDGNQRLAHY FADALEARLA GTRLSMHPIV SNGTSAADIL KAYKVYIAAC  420
PFKRMSNFFA NRTTKKLAQK APRLHIIDFG ILYGFQWPCL IQRLSERPGG APKLRITGIE  480
LPQSGFRPTE RVEETGRRLE NYCKRFNVPF EYNVIAQKWE TIKLEDLKID RDELTVVNCL  540
FRLKNIPDET VAMNNPRDTV LKLIKKINPD LFMHGVVNGT YNAPFFVTRF REALYHFSSL  600
FDMFDANLPL EDPGRLRYEK EIVGREAMNV VACEGLERIE RPETYKQWQV RNLRAGFRQV  660
PLDQELVQKV KKTVKSEYHK DFVVDVDGQW LLQGWKGRII YALSCWEPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein