PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023896813.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 449aa MW: 49681.5 Da PI: 5.9976

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023896813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	41	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_023896813.1 41 REKWTEEEHQKFLEALKLYGRG-WRQIEAHIG-TKTAVQIRSHAQKF 85 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MDIQGQNELT TSNADNYHPD GSVKSETAVK VRKPYTITKQ REKWTEEEHQ KFLEALKLYG 60 RGWRQIEAHI GTKTAVQIRS HAQKFFSKVV RASSSSSESS IEPVEIPPPR PKRKPLHPYP 120 RKLVDSLNGI SVADQSERSP SPNSLVAEKD TESPTSVFSA VGSDALGSAI SEQHNVCPSP 180 MSCTTDMHSI SLATVEKENE HMMVNSSVQD ERKFESASKE TLSTDGDEAM GAIVSSIKLF 240 GRTVLVTDSQ KPCSPGAGNI DSPTSKTILV NLDIDTEKLP ETLPSNQLDT HLSLEIVNCD 300 WRLLPCRAPV QCVEHQKENT NSAEANPYAS LPWLALYQGL PYYHLPSYNQ TSVQIPTYSC 360 VEEKTKERDI LKEKSCSGSN SVSASEVENE GKNLDAVDSQ FQETKGRINP CKSMKGFAPY 420 KRCLAERDAN SSVIVLEERE GQRARVCSY

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MDIQGQNELT TSNADNYHPD GSVKSETAVK VRKPYTITKQ REKWTEEEHQ KFLEALKLYG  60
RGWRQIEAHI GTKTAVQIRS HAQKFFSKVV RASSSSSESS IEPVEIPPPR PKRKPLHPYP  120
RKLVDSLNGI SVADQSERSP SPNSLVAEKD TESPTSVFSA VGSDALGSAI SEQHNVCPSP  180
MSCTTDMHSI SLATVEKENE HMMVNSSVQD ERKFESASKE TLSTDGDEAM GAIVSSIKLF  240
GRTVLVTDSQ KPCSPGAGNI DSPTSKTILV NLDIDTEKLP ETLPSNQLDT HLSLEIVNCD  300
WRLLPCRAPV QCVEHQKENT NSAEANPYAS LPWLALYQGL PYYHLPSYNQ TSVQIPTYSC  360
VEEKTKERDI LKEKSCSGSN SVSASEVENE GKNLDAVDSQ FQETKGRINP CKSMKGFAPY  420
KRCLAERDAN SSVIVLEERE GQRARVCSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	3e-52	MYB_related family protein