PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895892.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 420aa MW: 44978.7 Da PI: 9.2573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.8	7e-17	151	202	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++ah+ +ErrRR+++N+ f L+e++P + +++ + K +iL+ +eY+++L+ XP_023895892.1 151 RKTAHSLIERRRRSKMNEEFGVLKEMIPAC---KGQEMHKLAILQASIEYLRYLE 202 799*************************...******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MPRPHPPPTP RSSSDLRGRE GSFVAPAVNL PPAAYQDHDR ASSSSTPSAN GSDSSYRPVS 60 PTSPADLTRK RPANQAGGVI TKDDFALPPP PTRSRKIIQM KPRENDAQDA RPASATTSPQ 120 VTGKSQSTAP STGKRKQATA GTTAAGRKIA RKTAHSLIER RRRSKMNEEF GVLKEMIPAC 180 KGQEMHKLAI LQASIEYLRY LEQCVSDLQA QNQSPRSQPL PAAPARVARP DEDDEDDDED 240 MEDDNPGDGG TSTPATAGLE HSNSRVSLPS LSQITTTSTN TNSPSVFSVG AGRHYSISST 300 SQASYSPYFH SNQASPAFGP QLAHVANAPT YGNFGIGSPA LKPVDSAHHL RQIAEGATEL 360 SEKQRSALKS IAGRSEKDLD HEATAALLML NNDRRTWRAA QDPETMRSST GMSVRDLLSG

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MPRPHPPPTP RSSSDLRGRE GSFVAPAVNL PPAAYQDHDR ASSSSTPSAN GSDSSYRPVS  60
PTSPADLTRK RPANQAGGVI TKDDFALPPP PTRSRKIIQM KPRENDAQDA RPASATTSPQ  120
VTGKSQSTAP STGKRKQATA GTTAAGRKIA RKTAHSLIER RRRSKMNEEF GVLKEMIPAC  180
KGQEMHKLAI LQASIEYLRY LEQCVSDLQA QNQSPRSQPL PAAPARVARP DEDDEDDDED  240
MEDDNPGDGG TSTPATAGLE HSNSRVSLPS LSQITTTSTN TNSPSVFSVG AGRHYSISST  300
SQASYSPYFH SNQASPAFGP QLAHVANAPT YGNFGIGSPA LKPVDSAHHL RQIAEGATEL  360
SEKQRSALKS IAGRSEKDLD HEATAALLML NNDRRTWRAA QDPETMRSST GMSVRDLLSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	163	RKTAHSLIERRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-09	bHLH family protein