PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023895890.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 515aa MW: 56385.2 Da PI: 5.2753

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023895890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25	4.6e-08	168	193	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C C+ksF+r++ L +H+rt H XP_023895890.1 168 YYCAlpECDKSFTRSDALAKHMRTvH 193 789999******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MADSPASSDL SDPPSVESDT ERQSPAGTPS HIGLDDFDQH APPTKRRKTG PSALAFDRAL 60 SSQPDEDIDN ISISSDGWSS APGSPTHNEF ALREEAQTQC LWLDCEVGDT LNNDELVKHV 120 QTLHCPTGGP KKSKYVCLWG ECQRKTSNHP SGYALKAHMR SHTKEKPYYC ALPECDKSFT 180 RSDALAKHMR TVHEPEQVKA GPSVAADSPA PTSRKGKAKF ANGLAKTPAP PVPDSVSIGP 240 VYDEDGNPVE PSHPNDNITY LPAHHPVTGQ PGFMIHYPSD IHFTSWESSI NADQLMRVLR 300 RQLHWARKES EEIKRDLAHL EQLRREEWTL KEILLEGVME AELARGLADE RLRDAIPAHV 360 SERMEHDVAP SKRLMWSDGK PDWRRGLRTL AAADVLMRDG PNDREDDDDE DDDPDADITR 420 KNTPATAAVT VKRTPSPPGT GRSGGFDGDQ DPYDNYLSGI VAQYEARQQR ARSLHSSSTP 480 LRRGGDDAVF ATAAAASREE DAAGALMGLS NGPGA

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MADSPASSDL SDPPSVESDT ERQSPAGTPS HIGLDDFDQH APPTKRRKTG PSALAFDRAL  60
SSQPDEDIDN ISISSDGWSS APGSPTHNEF ALREEAQTQC LWLDCEVGDT LNNDELVKHV  120
QTLHCPTGGP KKSKYVCLWG ECQRKTSNHP SGYALKAHMR SHTKEKPYYC ALPECDKSFT  180
RSDALAKHMR TVHEPEQVKA GPSVAADSPA PTSRKGKAKF ANGLAKTPAP PVPDSVSIGP  240
VYDEDGNPVE PSHPNDNITY LPAHHPVTGQ PGFMIHYPSD IHFTSWESSI NADQLMRVLR  300
RQLHWARKES EEIKRDLAHL EQLRREEWTL KEILLEGVME AELARGLADE RLRDAIPAHV  360
SERMEHDVAP SKRLMWSDGK PDWRRGLRTL AAADVLMRDG PNDREDDDDE DDDPDADITR  420
KNTPATAAVT VKRTPSPPGT GRSGGFDGDQ DPYDNYLSGI VAQYEARQQR ARSLHSSSTP  480
LRRGGDDAVF ATAAAASREE DAAGALMGLS NGPGA