PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023895025.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 901aa    MW: 99586.7 Da    PI: 6.2356
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023895025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24130231199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023895025.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 220
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023895025.1 221 KNQLLLGIRRA 231
                     9999****997 PP
2Auxin_resp120.11.7e-39256339183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW++S+Wrs+k
  XP_023895025.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQKSHWRSVK 339
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    
MRLSSSSAAF NQHSQEGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PNLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLSPQEQK DVYLLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW QKSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS SFPLRLKRPW PSGLPSFHGL KDGDISISSP LMWLQAGLGD QGIQSLNFQG  420
FGVTPLMQPR FDSSILGPQP NVYQAMAAAA LQEMRTVDPS KCSSQSLLQL QQSQNVSNGP  480
NLIQRQMLQQ PQSQNSFLQS FQENQLPTQA QLLQQQLQCY QPYNNQRQQQ QQLQQSQQLH  540
HLSVQQQSPN VISAISNFAS ATQSQTPSLQ SIPSQCQQQC FPDPVGNPIS TSDVSPIHSI  600
LGSLSQDGAS YLHNLNGSNP AIASSSMLPK QIAVEPQLPS GAAQCVLPQV EQLGTLPSNV  660
SELAILPPFP GREYSGYQGA TDPQSNLLFG VNIDSSSLML QNGMANLRDI GSESDSLSMP  720
FSTSNFTSAT GTDFPLNSDI TTSSCVDESS FLQSSENVDQ VNPPTRTFVK VHKSGSFGRS  780
LDISKFSSYD ELRSELAHMF GLEGQLEDPQ RSGWQLVFVD RENDVLLLGD DPWQEFVNNV  840
WYIKILSPVE VRNLGKEGID LATSAPSRKL SNSSSSCDDY VSRQDLRNSS NGIAAMGSLD  900
Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein