PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894953.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 447aa MW: 49360.6 Da PI: 7.2936

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	136	181	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_023894953.1 136 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 181 899***************************.*********996 PP
2	Myb_DNA-binding	57.3	3.7e-18	188	232	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ + XP_023894953.1 188 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHVV 232 678*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MANNYAIYAP ENNPNGLSCY SSTPCSTSSS MGMVYADMGS LSLSPKYGVA SAISSSQESN 60 LSKSSHEVEN HRRPCWGALP FMGKNSNITR SFEENHNSNA GEGKVSDSSD GFEQNDDKNL 120 VSGKDIDSGQ SKLCARGHWR PAEDTKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN 180 QLDPRINRRA FTEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VVMARKYREQ 240 SNAYRRRKLG QSVYRRMDEN PSLVCGETAT RTEPLTYCLN LPNGGLNNNI TRFPFGAFNN 300 GGGGGGVDYN LNALNGSPHM TNGGEAISST KVPPYGGFCA LQQTPFDFFT GPNSSDIMGR 360 FSHGRSWDRP SDEANLTGFY SHYPPFMLAM QQSGNHNPYD YLEPSATPTP QVSASEPSSS 420 SATETRVGSQ YETIPPPFID FLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MANNYAIYAP ENNPNGLSCY SSTPCSTSSS MGMVYADMGS LSLSPKYGVA SAISSSQESN  60
LSKSSHEVEN HRRPCWGALP FMGKNSNITR SFEENHNSNA GEGKVSDSSD GFEQNDDKNL  120
VSGKDIDSGQ SKLCARGHWR PAEDTKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN  180
QLDPRINRRA FTEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VVMARKYREQ  240
SNAYRRRKLG QSVYRRMDEN PSLVCGETAT RTEPLTYCLN LPNGGLNNNI TRFPFGAFNN  300
GGGGGGVDYN LNALNGSPHM TNGGEAISST KVPPYGGFCA LQQTPFDFFT GPNSSDIMGR  360
FSHGRSWDRP SDEANLTGFY SHYPPFMLAM QQSGNHNPYD YLEPSATPTP QVSASEPSSS  420
SATETRVGSQ YETIPPPFID FLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-79	MYB family protein