PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894891.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26162.6 Da PI: 10.163

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.3e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_023894891.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73 79***********************************************8 PP
2	K-box	82.6	8.8e-28	92	183	4	95
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 s++ s++ea+++ +qqe+akL+ +i nLq+++R+++Ge+L++L++keL++Le++Le++++kiRskK+ l+++ + l+ k e+++++++L+ XP_023894891.1 92 SNTGSVAEANTQFYQQESAKLRVQIGNLQNSNRQMMGESLSNLTVKELKSLESKLERGISKIRSKKEVELHNNNQLLRAKIAENERNQQNLN 183 444459**********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVYPNQSMSL SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSTRGRLY EYANNSVKST IERYKKACAD SSNTGSVAEA NTQFYQQESA KLRVQIGNLQ 120 NSNRQMMGES LSNLTVKELK SLESKLERGI SKIRSKKEVE LHNNNQLLRA KIAENERNQQ 180 NLNVMPAGGG NYEFMQTQQY DSRNFFQVNA LQPNHQYPRE DQMSLQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-100	MIKC_MADS family protein