PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894825.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26518.1 Da PI: 10.2301

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.4e-31	24	73	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_023894825.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73 79***********************************************8 PP
2	K-box	82.6	9e-28	92	183	4	95
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 s++ s++ea+++ +qqe+akL+ +i nLq+++R+++Ge+L++L++keL++Le++Le++++kiRskK+ l+++ + l+ k e+++++++L+ XP_023894825.1 92 SNTGSVAEANTQFYQQESAKLRVQIGNLQNSNRQMMGESLSNLTVKELKSLESKLERGISKIRSKKEVELHNNNQLLRAKIAENERNQQNLN 183 444459**********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MVYPNQSMSL SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSTRGRLY EYANNSVKST IERYKKACAD SSNTGSVAEA NTQFYQQESA KLRVQIGNLQ 120 NSNRQMMGES LSNLTVKELK SLESKLERGI SKIRSKKEVE LHNNNQLLRA KIAENERNQQ 180 NLNVMPAGGG NYEFMQTQQY DSRNFFQVNA LQPNHQYPRE DQMSLQLVNK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-100	MIKC_MADS family protein