PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894765.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27928.7 Da    PI: 10.0166
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_023894765.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73
                    79***********************************************8 PP
2K-box112.93.3e-37921884100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R+++Ge+L++L++keL++Le++Le++++kiRskKnell+++ie++qk+e el+++n+ Lr+k+
  XP_023894765.1  92 SNTGSVAEANTQFYQQESAKLRVQIGNLQNSNRQMMGESLSNLTVKELKSLESKLERGISKIRSKKNELLFAEIEYMQKREVELHNNNQLLRAKI 186
                     444459****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_023894765.1 187 AE 188
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MVYPNQSMSL SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNSVKST IERYKKACAD SSNTGSVAEA NTQFYQQESA KLRVQIGNLQ  120
NSNRQMMGES LSNLTVKELK SLESKLERGI SKIRSKKNEL LFAEIEYMQK REVELHNNNQ  180
LLRAKIAENE RNQQNLNVMP AGGGNYEFMQ TQQYDSRNFF QVNALQPNHQ YPREDQMSLQ  240
LV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein