PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023894716.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARF
Protein Properties Length: 846aa    MW: 94663.2 Da    PI: 6.1452
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023894716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023894716.1 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 216
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023894716.1 217 KNQLLLGIRRA 227
                     9999****997 PP
2Auxin_resp120.31.5e-39252335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+v+YnPras+seFvv+++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_023894716.1 252 AAHAASTNSCFTVFYNPRASPSEFVVPFSKYLKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 335
                     79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    
MKLSTSGLTQ LDHEEKKCLN SELWHACAGP LVSLPTPGTR VVYFPQGHSE QVAASTNKEI  60
DGHIPNYPSL PPQLMCQLHN VTMHADVETD EVYAQMTLQP LTLEEQKDTF LPMELGIPSK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHDVEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVLS  240
SDSMHIGLLA AAAHAASTNS CFTVFYNPRA SPSEFVVPFS KYLKAVFHTR VSVGMRFRML  300
FETEESSVRR YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSLFPL RLKRPWHPGV SSLHDNRDDA ANGMMWLRGG SGEHGLHSLN FQGVGLYPWM  420
QQRMDPTLLG NDPNQQYQAM LAAGMQNLGN ADLLRHQVMQ FQQPFQYLQQ QGSHTSLLQQ  480
QQQQQQQQQA VPLNILQAQT QVLSENTPQH LIQQSLNNQQ EDQARQQQPQ QQHTYQNTLH  540
IRSDQLHQRL QSNVPSSSFV KVDFMDPSTK FSASISPRQN MVSSLCPEGS SNILNFSRVG  600
QPMLAEQLPQ QSWAPKYTHS QVNAFANSMS HSPYPGKDGT EEPENCNSDS QNPTLFGVNI  660
DSSGLLLPAT LSTFATSVDA DVSSMPLGHT GFQSSLYGSV QDSSELLNSA GQVDPPTPSQ  720
TFVKVYKTGS VGRSLDISRF SSYNELREEL AEMFGIEGKF EDPLRSGWQL VFVDRENDVL  780
LLGDDPWEAF VNNVWYIKIL SPEDVHKLGE QAVESFSPQG GQRLNSSSGE AQDLVSGLPS  840
LGMLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein