PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894490.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 389aa MW: 42494.4 Da PI: 8.5551

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	93	169	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls +++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_023894490.1 93 CLVDGCTSDLSICRDYHRRHKVCELHSKTPQVTICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MDWNLKAPSW DLSELGQGAF PNIETVSGSS SFGDHRAQRG DFSVDLKLGQ VGSSGNESVN 60 KWKEPGVSKM ASPPSGSSKR ARAANNGTLP VSCLVDGCTS DLSICRDYHR RHKVCELHSK 120 TPQVTICGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE TLSRSGNFLS 180 NYQGPQFIQF SGTHVYPSTT VMSPAWTGVL NTAADARLPN QQQQLQLLDK QKLYLGSSPS 240 TSSYIGGGKQ LSFLQNGSTT LNNQLSLEAP VCQPLLRTIA SESDRARSKM YCDRLTARVH 300 DSDCALSLLS SPQSQSSGLN LSHVMHPNSA SLVQPLGPSL HGDSTLEPMD SVLVSNGSGN 360 NVHCQGMFLM GSDGSQGNQT PQNLPFHWE

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MDWNLKAPSW DLSELGQGAF PNIETVSGSS SFGDHRAQRG DFSVDLKLGQ VGSSGNESVN  60
KWKEPGVSKM ASPPSGSSKR ARAANNGTLP VSCLVDGCTS DLSICRDYHR RHKVCELHSK  120
TPQVTICGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE TLSRSGNFLS  180
NYQGPQFIQF SGTHVYPSTT VMSPAWTGVL NTAADARLPN QQQQLQLLDK QKLYLGSSPS  240
TSSYIGGGKQ LSFLQNGSTT LNNQLSLEAP VCQPLLRTIA SESDRARSKM YCDRLTARVH  300
DSDCALSLLS SPQSQSSGLN LSHVMHPNSA SLVQPLGPSL HGDSTLEPMD SVLVSNGSGN  360
NVHCQGMFLM GSDGSQGNQT PQNLPFHWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-81	SBP family protein