PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023894428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | C3H | ||||||||
Protein Properties | Length: 452aa MW: 49878.3 Da PI: 8.1055 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 81 | 105 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+C+F H+ XP_023894428.1 81 GEKDCAHYMLTRTCKFGDSCRFDHP 105 7889********************8 PP | |||||||
2 | zf-CCCH | 35.1 | 2.2e-11 | 133 | 159 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G rCkF+H++ XP_023894428.1 133 PGMPDCPYFLKTQRCKFGLRCKFNHPK 159 5789*********************96 PP | |||||||
3 | zf-CCCH | 38.7 | 1.6e-12 | 182 | 206 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_023894428.1 182 EPPCAFYMKTGKCKFGPTCKFNHPK 206 79*********************96 PP | |||||||
4 | zf-CCCH | 38.2 | 2.4e-12 | 259 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_023894428.1 259 PGEADCPFYLKTGSCKYGATCRYNHP 284 57899********************9 PP | |||||||
5 | zf-CCCH | 40.6 | 4.1e-13 | 343 | 366 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G++CkF+H+ XP_023894428.1 343 QIECDFYMKTGECKFGENCKFHHP 366 568********************8 PP | |||||||
6 | zf-CCCH | 43.2 | 6.7e-14 | 397 | 420 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++++tGtCkyG++CkF H+p XP_023894428.1 397 VLCPYYLKTGTCKYGATCKFDHPP 420 79********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence |
MYVLITKLAF KPYLLYSNIY VSCGFLVYTC LLRTIVLYHQ TVLGAHNTIG QTEAWYSTNS 60 LAKRPRFDSA SNLPIYPQRP GEKDCAHYML TRTCKFGDSC RFDHPIWVPE GGIPDWKEVP 120 PLAATTESLP ERPGMPDCPY FLKTQRCKFG LRCKFNHPKD KLVTEVALEN AAISALPERP 180 SEPPCAFYMK TGKCKFGPTC KFNHPKDIQI PLLGQENGND EQTELTMKAL ATADAILANS 240 LASYTPALIY NSKGLPVRPG EADCPFYLKT GSCKYGATCR YNHPDRHAIN PPAAAIGLPI 300 VASPATNLNI GVVNPAASIY QTIDPRLAQP TVGPTIYPQR PGQIECDFYM KTGECKFGEN 360 CKFHHPIDRS APSLLKQAQQ QAVKLTLAGL PRREGAVLCP YYLKTGTCKY GATCKFDHPP 420 PGEVMAMATS QGTSTAVEGD EKEAELVQEQ QQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |