PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023894305.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 36935.5 Da PI: 4.4242

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023894305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.2e-19	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa++k XP_023894305.1 92 KKRRLSTDQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWK 145 56689************************************************9 PP
2	HD-ZIP_I/II	128.5	2.7e-41	91	182	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls++qv++LE+sFe e+kLep+rKv+la+eLglqprqva+WFqnrRAR+ktkq+Ek+ye+L+++y++lk++ e+L ke+++L++++ XP_023894305.1 91 EKKRRLSTDQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARWKTKQMEKEYEVLQDSYNSLKADYENLLKEKDKLKAQVV 182 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MAGGRVYSSG TGGNSGSNLS VLFQNQKGAC ASEPLDSLFL SGSSPSFLGS RSMVSFADVR 60 GGNGSNRPFF RAYDHDDNGD EDLEDYFHQP EKKRRLSTDQ VQFLEKSFEV ENKLEPDRKV 120 QLAKELGLQP RQVAIWFQNR RARWKTKQME KEYEVLQDSY NSLKADYENL LKEKDKLKAQ 180 VVVLQDKLLL REKEGGISEQ SDTNKLSQEP LQKPVAESVS EGEVSKVSIV ACKQEDMSSA 240 KSDIFDSDSS HYTDGVHSSL LEPGDSSNVF EPDQSDLSQD EEDNLNLSKS LLPAYIFPKL 300 EDVDYSDPSE NSCNFGFPAD DHAFWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-42	HD-ZIP family protein