PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023893622.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 377aa MW: 41790.9 Da PI: 7.5015

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023893622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_023893622.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_023893622.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKT DALSSGSGNS KNAANLSHMA QWESARLEAE ARLVRESKLV VVSNPIQSQT 180 QTQTQSQIQT QLINKNPPPP CLDVLKAWQG VWSKSISPGM FPIGCDDLES PTSTLSFADH 240 TVTIPNVVFS ENTVSAALDF AKNSVTCQMD NTMSLQDMNN SRTTATTTTT NTTESAWIIG 300 DSFRAVNENN MQLSNIMEGF TDIFGYNCEE HNTLMGGGDS LDNGDKSCGG NFEENNKNYW 360 NSILHLVNAS SSGSPVF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT DALSSGSGNS KNAANLSHMA QWESARLEAE ARLVRESKLV VVSNPIQSQT  180
QTQTQSQIQT QLINKNPPPP CLDVLKAWQG VWSKSISPGM FPIGCDDLES PTSTLSFADH  240
TVTIPNVVFS ENTVSAALDF AKNSVTCQMD NTMSLQDMNN SRTTATTTTT NTTESAWIIG  300
DSFRAVNENN MQLSNIMEGF TDIFGYNCEE HNTLMGGGDS LDNGDKSCGG NFEENNKNYW  360
NSILHLVNAS SSGSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-113	MYB family protein