PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023893543.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 531aa MW: 57661.4 Da PI: 9.5499

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023893543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023893543.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	12.7	0.0004	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_023893543.1 137 WKCEKCSKKYAVQSDWKAHSKTC 159 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MMSGDSFSVA SSIGGFGQEV QNTNPNPNPA AKKKRNLPGT PDPDAEVIAL SPKTLMATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTNKEVRKK VYICPEKTCV HHDPSRALGD 120 LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT 180 HRAFCDALAD ESARLTSLAA ANNLNFGNDS MNETVINPQP GLPLGASQFG PGFRPELSGM 240 AINGNSLGVD QQKPRLSLWL NHANSQLNPT DMMANSHLYA SSSSTAFPEM VQAVSGNLFG 300 SSSMPNFGNF NNQQFQGFDK SVSTSTNASL SLSAIPHEMK EEGNKGNLVE TQSSLYSDTQ 360 KKQSKPSMPM SATALLQKAA QMGSTTSNPS SIFGNSFGVM SSSSSNTTTS FNTLNQNRNE 420 LHQALQNSKQ QAAENFTASG SVDGMLGSSN LSSLTTSTNS FDQLMMQTSG KQSDPVALNN 480 HPGSNAIENS LTRDFLGMGG RESQRPFLAQ ELAKFASMSS AMGLSQFTGN H

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MMSGDSFSVA SSIGGFGQEV QNTNPNPNPA AKKKRNLPGT PDPDAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTNKEVRKK VYICPEKTCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAD ESARLTSLAA ANNLNFGNDS MNETVINPQP GLPLGASQFG PGFRPELSGM  240
AINGNSLGVD QQKPRLSLWL NHANSQLNPT DMMANSHLYA SSSSTAFPEM VQAVSGNLFG  300
SSSMPNFGNF NNQQFQGFDK SVSTSTNASL SLSAIPHEMK EEGNKGNLVE TQSSLYSDTQ  360
KKQSKPSMPM SATALLQKAA QMGSTTSNPS SIFGNSFGVM SSSSSNTTTS FNTLNQNRNE  420
LHQALQNSKQ QAAENFTASG SVDGMLGSSN LSSLTTSTNS FDQLMMQTSG KQSDPVALNN  480
HPGSNAIENS LTRDFLGMGG RESQRPFLAQ ELAKFASMSS AMGLSQFTGN H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	100	KLRQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-107	C2H2 family protein