PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023893498.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SBP

Protein Properties

Length: 999aa MW: 111008 Da PI: 6.2027

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023893498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	4e-41	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvCe+hska+++lv ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_023893498.1 154 VCQVEDCGADLNNAKDYHRRHKVCEMHSKASKALVGNTWQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 231 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MEARFGGEAH RFYAMSAADL RAMGKRTSDW DSNDWKWDGD LFIASRMNPL PSDSVGQQFF 60 PIGSEIPVNG GSSNSSSSCS DEVSLGVEKG KRELEKRRRV IVVEDDNLND EEAGGLALKL 120 GGQGYQVTER EVGNWEGTSG KKTKLVGSTS NRAVCQVEDC GADLNNAKDY HRRHKVCEMH 180 SKASKALVGN TWQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PDPVVNGNTL 240 NDDQTSGYLL ISLLRILSNL HSNRSDQTTE QDVLSHLLRS LANQTAEHGG KDISGILREP 300 SNLASLGNSE LVSALLSNGL QGPSRPFKQH QPVPVSEIPR QGLSVDDARV GDIQNTSSKP 360 SVLNSPPAYS EVRDSSAGQI KTNNFDLNDI YIDSDDGMED MERSPIPVNM GTSSLDSHQS 420 SPPQTSGNSD SASAQSPSSS SGEAQSRTDR IVFKLFGKDP NDFPLVLRAQ ILDWLSHSPT 480 DIESYIRPGC IILTIYLHQA EAAWEELCYD LSSSLNRLLD VSDDTCWRTG WVYVRVQHQI 540 AFIYDGQVVI DTSLPLRSNN YSKILSVRPV AISTTERAQF LVKGINLTRP TTRLLCALEG 600 NYLVEENTHD SMDSRNTLKE NDELQCINFS CSIPAVNGRG FIEIEDHGFS STFFPFIVAE 660 EDVCSEIRAL ESELELSETN ADLGGSGRME TKNQALDFIN EMGWLLHRSQ LKSRLGNMDP 720 NPESFHLKRF KWLMEFSMDH DWCAVVRKLL GILLDETVGA GEHSSLNLAL AEMGLLHRAV 780 RRNSRALVEL LLRYQISDKL ISENKSQVDG GKGRFLFRPD VVGPSGLTPL HIAAGKDGSE 840 NILDALTDDP KMVGIEAWNS ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KKSAAEHVVL 900 DIHSVLSDCS VDKKQNNELT STFEIKGTDL KCIRQQCKLC DRKLAYKTGS RFLVYRPVML 960 SMVAIAAVCV CVALLFKSSP EVLFVFRPFS WEALSYGPI

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MEARFGGEAH RFYAMSAADL RAMGKRTSDW DSNDWKWDGD LFIASRMNPL PSDSVGQQFF  60
PIGSEIPVNG GSSNSSSSCS DEVSLGVEKG KRELEKRRRV IVVEDDNLND EEAGGLALKL  120
GGQGYQVTER EVGNWEGTSG KKTKLVGSTS NRAVCQVEDC GADLNNAKDY HRRHKVCEMH  180
SKASKALVGN TWQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PDPVVNGNTL  240
NDDQTSGYLL ISLLRILSNL HSNRSDQTTE QDVLSHLLRS LANQTAEHGG KDISGILREP  300
SNLASLGNSE LVSALLSNGL QGPSRPFKQH QPVPVSEIPR QGLSVDDARV GDIQNTSSKP  360
SVLNSPPAYS EVRDSSAGQI KTNNFDLNDI YIDSDDGMED MERSPIPVNM GTSSLDSHQS  420
SPPQTSGNSD SASAQSPSSS SGEAQSRTDR IVFKLFGKDP NDFPLVLRAQ ILDWLSHSPT  480
DIESYIRPGC IILTIYLHQA EAAWEELCYD LSSSLNRLLD VSDDTCWRTG WVYVRVQHQI  540
AFIYDGQVVI DTSLPLRSNN YSKILSVRPV AISTTERAQF LVKGINLTRP TTRLLCALEG  600
NYLVEENTHD SMDSRNTLKE NDELQCINFS CSIPAVNGRG FIEIEDHGFS STFFPFIVAE  660
EDVCSEIRAL ESELELSETN ADLGGSGRME TKNQALDFIN EMGWLLHRSQ LKSRLGNMDP  720
NPESFHLKRF KWLMEFSMDH DWCAVVRKLL GILLDETVGA GEHSSLNLAL AEMGLLHRAV  780
RRNSRALVEL LLRYQISDKL ISENKSQVDG GKGRFLFRPD VVGPSGLTPL HIAAGKDGSE  840
NILDALTDDP KMVGIEAWNS ARDSTGSTPE DYARLRGHYS YIHLVQKKIN KKSAAEHVVL  900
DIHSVLSDCS VDKKQNNELT STFEIKGTDL KCIRQQCKLC DRKLAYKTGS RFLVYRPVML  960
SMVAIAAVCV CVALLFKSSP EVLFVFRPFS WEALSYGPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein