PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023893416.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family bHLH
Protein Properties Length: 353aa    MW: 39381.6 Da    PI: 7.221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023893416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12177223455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  XP_023893416.1 177 DHVIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 223
                     6999***********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MESSSAKWIS ELEMEDPAFI HQYEINSFGY SLDNLDFRSF SGESYPSNPD LNPKSTYNFH  60
ASVIENPQID LGRPAKQLKT KSWNSCATDH IPSKAASSSS SHLISFENSN SPPAISQQFY  120
GLDCTMRPKN EAVSDRNTNF PAMISESSFG MQNCSSKHGE VPKKVATMTR TPLHAQDHVI  180
AERKRREKLS QRFIALSAVV PGLKKMDKAS VLGDAIKYLK QLQERVKTLE EQAAKKTMES  240
VVFVKKTRLS AADDTSSSED NSDSESKEQL PQIEARVLEK DVLIRIHCEN RKGYAAKILG  300
EIEKLDLAIL NSSVLPFGNS TLDITVVAQM DVDFCMTVKD LARNLRQALL KLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-60bHLH family protein