PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023893231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | LSD | ||||||||
Protein Properties | Length: 137aa MW: 14810.8 Da PI: 6.1258 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.5 | 8e-12 | 48 | 71 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg C++lL YPrGA+ V+C++C+t XP_023893231.1 48 CGTCHNLLKYPRGARQVHCSCCHT 71 ***********************8 PP | |||||||
2 | zf-LSD1 | 34.6 | 3.1e-11 | 86 | 110 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+Y GA+sV+C++C +V XP_023893231.1 86 CGSCEVLLMYQHGASSVKCSSCYFV 110 **********************887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence |
MGSKEMEEEE DEGPPPGWQS IPLPSSQPPA PAPAPAPPSP SEMAQMVCGT CHNLLKYPRG 60 ARQVHCSCCH TGNFVLEAHE VGLVKCGSCE VLLMYQHGAS SVKCSSCYFV TEIGEHNRRP 120 PWSVQQGQPP QPPNPVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-31 | LSD family protein |