PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023892853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25918.4 Da PI: 8.8539 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 20 | 63 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++eE +++ +++k+ + + +++Iar+++ ++ ++k+++ XP_023892853.1 20 VWSPEENKKFEELIKEIPLDcphIFEKIARELP-SKSILDIKEHY 63 7********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9e-16 | 123 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+el+ ++ +G+g+Wk+Iar++ ++ q+ s+ qky XP_023892853.1 123 QWTKEEHELFEEGLMIYGKGDWKSIARHVS-TKNNTQIASHAQKY 166 7*****************************.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MNLLLSSDLR YNLQSPPRAV WSPEENKKFE ELIKEIPLDC PHIFEKIARE LPSKSILDIK 60 EHYGSLIEGV FIRHRPSFIE VPNYGNSEIG EIVEEIPNKK KKGKEVAPAV EEKPKKKRGM 120 GDQWTKEEHE LFEEGLMIYG KGDWKSIARH VSTKNNTQIA SHAQKYFLRL EKTRAQQNAT 180 YSSGSSKAST SKDAPMSPIA SATDLPVQSD AFFIHPSSST YPSNKFHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 118 | KKKKGKEVAPAVEEKPKKKR |
2 | 100 | 119 | KKKKGKEVAPAVEEKPKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 9e-29 | MYB family protein |