PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023892361.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 380aa MW: 41589.8 Da PI: 6.1444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023892361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	162	183	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_023892361.1 162 FCEICGKGFKRDANLRMHMRAH 183 6*******************99 PP
2	zf-C2H2	11.7	0.00082	284	300	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_023892361.1 284 TCGTSFSRKDKLFGHMT 300 6**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MFNTGESFRI PAGYSAGLGH NPGQNRVGSS DSRVPLLNLS TVRTRMDSLQ RFLSDSVNQN 60 QLISQDQMDM VSTEIVSAIH QIIVNGAALL SCSQTSDLTA AAAEVAQPNS TTPPKLAPDT 120 SVPLKVEASD SDDFKVENSF LDSDSEIVEL DAVELLAEHI HFCEICGKGF KRDANLRMHM 180 RAHGNQYKTP EALAKPDRQL GGSSAAAESS RHTKFSCPYD GCNRNKSHKK FRPLKSVICV 240 KNHFKRSHCP KMYSCNRCNK KSFSVVADLK NHLKHCGEAR WKCTCGTSFS RKDKLFGHMT 300 LFEGHMPAVG GDDEECPKIA PDSSAAVTAM EEDDEDVVMG SDNGLLFEGL LDDFGGSIDS 360 YYCFQDMLGS PQLNGMESCL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MFNTGESFRI PAGYSAGLGH NPGQNRVGSS DSRVPLLNLS TVRTRMDSLQ RFLSDSVNQN  60
QLISQDQMDM VSTEIVSAIH QIIVNGAALL SCSQTSDLTA AAAEVAQPNS TTPPKLAPDT  120
SVPLKVEASD SDDFKVENSF LDSDSEIVEL DAVELLAEHI HFCEICGKGF KRDANLRMHM  180
RAHGNQYKTP EALAKPDRQL GGSSAAAESS RHTKFSCPYD GCNRNKSHKK FRPLKSVICV  240
KNHFKRSHCP KMYSCNRCNK KSFSVVADLK NHLKHCGEAR WKCTCGTSFS RKDKLFGHMT  300
LFEGHMPAVG GDDEECPKIA PDSSAAVTAM EEDDEDVVMG SDNGLLFEGL LDDFGGSIDS  360
YYCFQDMLGS PQLNGMESCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	3e-83	C2H2 family protein