PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891921.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 562aa MW: 61618.9 Da PI: 9.6539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023891921.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	15.4	5.2e-05	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_023891921.1 162 WKCDKCSKKYAVQSDWKAHQKTC 184 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MSNATGDEGS FSSGNTGEGV VQEKQQQQLQ NHLHGSSSGP SGANSNSSTS QQQPPAKKKR 60 NLPGTPDPNA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST 120 EVKKRVYTCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH 180 QKTCGTREYK CDCGTIFSRK DSFITHRAFC DALAEENNKV NQGLMNNNIG SNLDTQMPEL 240 MSSMPINTTT NTSIRTSEFN NFDTKNPLKS LPQELVPIPF KSMNMGGLLS SSSGTLFVGP 300 KTSSSSSLHL SSNSSSGLNY LQDNKNGCQI SGSAHMSATA LLQKAAQMGA TASNNTINSP 360 MMQNSLVSAS MAVNHDQISS IRPPYSSSAI QQHNINASYD NFQPQPGQSN MVGINGGAFI 420 NQEPLQKVPQ EISQLFGSTT TSTGGGSTIN DMAMFSQMIM NQGFMMKNIE KANSTSSSLI 480 HGKAIVELSQ TEPSSFRGSD RTTVDFMGIG GSRPVNMHEQ QQQRRQRLEL EAIRQQRFPI 540 MNHFQQQFTH GDSGIGKPFW DV

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MSNATGDEGS FSSGNTGEGV VQEKQQQQLQ NHLHGSSSGP SGANSNSSTS QQQPPAKKKR  60
NLPGTPDPNA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST  120
EVKKRVYTCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH  180
QKTCGTREYK CDCGTIFSRK DSFITHRAFC DALAEENNKV NQGLMNNNIG SNLDTQMPEL  240
MSSMPINTTT NTSIRTSEFN NFDTKNPLKS LPQELVPIPF KSMNMGGLLS SSSGTLFVGP  300
KTSSSSSLHL SSNSSSGLNY LQDNKNGCQI SGSAHMSATA LLQKAAQMGA TASNNTINSP  360
MMQNSLVSAS MAVNHDQISS IRPPYSSSAI QQHNINASYD NFQPQPGQSN MVGINGGAFI  420
NQEPLQKVPQ EISQLFGSTT TSTGGGSTIN DMAMFSQMIM NQGFMMKNIE KANSTSSSLI  480
HGKAIVELSQ TEPSSFRGSD RTTVDFMGIG GSRPVNMHEQ QQQRRQRLEL EAIRQQRFPI  540
MNHFQQQFTH GDSGIGKPFW DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-97	C2H2 family protein