PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891874.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 313aa    MW: 34918.9 Da    PI: 7.3079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l +++k+ G g+W+t +++ g+ R++k+c++rw +yl
   XP_023891874.1 24 RGPWTPEEDDILSNYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 71
                     89******************************99************97 PP
2Myb_DNA-binding48.52e-1577122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_023891874.1  77 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEVKNYWNTHL 122
                      678889****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MRNPSSGGGS TSKTPCCSKV GIKRGPWTPE EDDILSNYIK REGEGRWRTL PKRAGLLRCG  60
KSCRLRWMNY LRPSVKRGRI APDEEDLILR LHRLLGNRWS LIAGRIPGRT DNEVKNYWNT  120
HLSKKLISQG IDPRTHKPLV VNPNPNNSPE VIIAHDHAAS NSKPDPKSNL SPGLIEETGG  180
SSLVSGIQIS DANDQLGQYQ NLVVNDISNT QNWHNSDGAM TMGLRGGYVK GNEEEYIENC  240
NEDTFSSFLD SLINDNMFAN QQQQQPTFNP LISSSSSTPT FNHAAIWEAE LIRSTIHTSH  300
DEQSELNNIN HLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-74MYB family protein