PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891770.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family B3
Protein Properties Length: 434aa    MW: 48687.6 Da    PI: 10.3222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.1e-20127224199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f  v+ ps+v     l+++ +fa++++ k  ++  ++l++ +g +W+vk+++ k +    +++GWk+F+++n+Lk+gD+++F+l++  e  ++v+
  XP_023891770.1 127 FMVVMQPSYVYPGISLSISSSFAKKYMRK-MSGEFVILRSFNGGTWSVKFSFFKAQTNAKFRQGWKKFARDNNLKVGDVCIFELINGVEVAFKVS 220
                     778999********************655.56678*****************99999999*************************8866668999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  XP_023891770.1 221 IFRA 224
                     9986 PP
2B339.31.1e-12332431498
                     E-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     v +++++ ++g ++lp  f   +         gg+   s++l++ d   r W vkl y      +s ++ l++GW+ F+ +n L++gD++vF+l+
  XP_023891770.1 332 VIMQPSYIRKGGMSLPGIFN--YllrkgfitkGGV--LSVKLQVVD---RLWPVKL-YayegMYQSISCKLSAGWSAFATENTLRVGDVCVFELI 418
                     45677777888899999994..4456666654444..677777777...9******.3355555555599************************9 PP

                     SSSEE..EEEEE- CS
              B3  86 grsefelvvkvfr 98 
                      + +  l+v++fr
  XP_023891770.1 419 MKYDVVLKVHIFR 431
                     8888889999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MEDIERDDID NSLEIVGVFM PSRKTREKSP LPCPLPQKRA KTNPRSSVLQ AGDTHFRPEL  60
TKSKGSVLEK SKMNAGVSFT MRESKEECSG ATKRCPKSEA IERTLSASEK DRALQRVRAF  120
ESKNPFFMVV MQPSYVYPGI SLSISSSFAK KYMRKMSGEF VILRSFNGGT WSVKFSFFKA  180
QTNAKFRQGW KKFARDNNLK VGDVCIFELI NGVEVAFKVS IFRAANDIDC PLLNGSAHGV  240
GRNRLGRKSS PLVKPESDCN LDDVSLSCNQ CPAKDGGVGM STNRRRLKAK ALVKKQEYKA  300
LEKKQELMTT NGKAENLVRA NAFKSDNPLF MVIMQPSYIR KGGMSLPGIF NYLLRKGFIT  360
KGGVLSVKLQ VVDRLWPVKL YAYEGMYQSI SCKLSAGWSA FATENTLRVG DVCVFELIMK  420
YDVVLKVHIF RCLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-25B3 family protein