PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023891769.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family B3
Protein Properties Length: 435aa    MW: 48758.7 Da    PI: 10.3222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023891769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.2e-20128225199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f  v+ ps+v     l+++ +fa++++ k  ++  ++l++ +g +W+vk+++ k +    +++GWk+F+++n+Lk+gD+++F+l++  e  ++v+
  XP_023891769.1 128 FMVVMQPSYVYPGISLSISSSFAKKYMRK-MSGEFVILRSFNGGTWSVKFSFFKAQTNAKFRQGWKKFARDNNLKVGDVCIFELINGVEVAFKVS 221
                     778999********************655.56678*****************99999999*************************8866668999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  XP_023891769.1 222 IFRA 225
                     9986 PP
2B339.31.1e-12333432498
                     E-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     v +++++ ++g ++lp  f   +         gg+   s++l++ d   r W vkl y      +s ++ l++GW+ F+ +n L++gD++vF+l+
  XP_023891769.1 333 VIMQPSYIRKGGMSLPGIFN--YllrkgfitkGGV--LSVKLQVVD---RLWPVKL-YayegMYQSISCKLSAGWSAFATENTLRVGDVCVFELI 419
                     45677777888899999994..4456666654444..677777777...9******.3355555555599************************9 PP

                     SSSEE..EEEEE- CS
              B3  86 grsefelvvkvfr 98 
                      + +  l+v++fr
  XP_023891769.1 420 MKYDVVLKVHIFR 432
                     8888889999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MEDIERDDID NSLEIVGVFM PSRKTREKSP LPCPLPQKRA KTNPRSSVLQ AGDTHFRPEL  60
TKSKGSVLEK SKMNAGVSFT MRESKAEECS GATKRCPKSE AIERTLSASE KDRALQRVRA  120
FESKNPFFMV VMQPSYVYPG ISLSISSSFA KKYMRKMSGE FVILRSFNGG TWSVKFSFFK  180
AQTNAKFRQG WKKFARDNNL KVGDVCIFEL INGVEVAFKV SIFRAANDID CPLLNGSAHG  240
VGRNRLGRKS SPLVKPESDC NLDDVSLSCN QCPAKDGGVG MSTNRRRLKA KALVKKQEYK  300
ALEKKQELMT TNGKAENLVR ANAFKSDNPL FMVIMQPSYI RKGGMSLPGI FNYLLRKGFI  360
TKGGVLSVKL QVVDRLWPVK LYAYEGMYQS ISCKLSAGWS AFATENTLRV GDVCVFELIM  420
KYDVVLKVHI FRCLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-25B3 family protein