PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891309.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 404aa MW: 45418.4 Da PI: 7.3376

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_023891309.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	22.6	1.9e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G C yG+rC++ H+ XP_023891309.1 34 ICTYYQK-GLCAYGSRCRYEHV 54 8****.*********997 PP
3	zf-CCCH	19.8	1.4e-06	142	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ +a+ G C++G++C+ Hg XP_023891309.1 142 DRPICS-YAAAGNCPRGEKCPHLHG 165 6899.***********98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PHNICTYYQK GLCAYGSRCR YEHVKASRGH 60 SSASSSSTNA RQSLVLDIVP PGNSTRSVLG GVMPVPGSPM ELSASSRPFI PPTKPAWNQE 120 YGHHDSLDDW DIGEASSIRP SDRPICSYAA AGNCPRGEKC PHLHGDLCPT CGKHCLHPFR 180 PEEREEHLKS CEKKQKHLEA LKHSQEIECS VCLERVLSKP TAAERKFGLL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY SSKEEKQDIV DSYKAKLKSI 300 DCKHFDFGNG NCPFGSSCFY KHKVKPGSYT WRHHRPPPRR PPPRRSGFVD DLFDMFNSIE 360 ELTASETALD PMEELTSLEM ALLLRDLILD TSDSSSDEED FYSP

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PHNICTYYQK GLCAYGSRCR YEHVKASRGH  60
SSASSSSTNA RQSLVLDIVP PGNSTRSVLG GVMPVPGSPM ELSASSRPFI PPTKPAWNQE  120
YGHHDSLDDW DIGEASSIRP SDRPICSYAA AGNCPRGEKC PHLHGDLCPT CGKHCLHPFR  180
PEEREEHLKS CEKKQKHLEA LKHSQEIECS VCLERVLSKP TAAERKFGLL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY SSKEEKQDIV DSYKAKLKSI  300
DCKHFDFGNG NCPFGSSCFY KHKVKPGSYT WRHHRPPPRR PPPRRSGFVD DLFDMFNSIE  360
ELTASETALD PMEELTSLEM ALLLRDLILD TSDSSSDEED FYSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-144	C3H family protein