PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023891034.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 809aa MW: 88136.7 Da PI: 6.1821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023891034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25.7	2.8e-08	553	575	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+r +nL++H+rtH XP_023891034.1 553 FQCTLCPKRFTRAYNLRSHLRTH 575 89********************9 PP
2	zf-C2H2	16.3	2.7e-05	581	602	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C+ Cgk F r+++ krH + XP_023891034.1 581 FVCTVCGKAFARQHDRKRHEGL 602 89*****************755 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MDVSSHNNYD RRRSPSAGRL DHADLQHRAA ASQPLSSFAD SNFDPNPLLF DNTALGSYSN 60 PGASLDTAFS SGYQPQAQFP LTSNYTNFQQ EQQQRMPPHL TTQNSNFSDH SFVQSNGLSP 120 QDTGHFSSQG SSHVSPSSIN NEPSAFPSFD FGSTDLSQVG FDQPGSLDPT LLDGINTSGM 180 DSQVGLLDQM GPALTSRSPP LPHLTPDMNM RRHSGSPSPH TSPGFQQTAS FSSQSDNRPR 240 NLSESLDPSS AMFPPSGQGN EWSAMGAYRG AHRRTPSDNY SDISSTHNSP YLGNLDSFDA 300 NAQSSPMLNP TSDPSFANDL SMQGFTLNES QGPSQQSLFN YSPVPSPQSS QRLSAQQAAM 360 TNLASDNSYG LNVNVNGQFS QPQNNDGDMF LGTNHEPFPS LNSQQTPGGE LGLADQMSPP 420 EINIDFVPDS KNPMEPIRST HGDDTLSPPQ RTGRARSKSD SQASPRPASP GFARGRSPSL 480 QDKQSNSLSP LQNGHNSANS SRSASPARGR NGSLGSRNRS HSASDNRDYI LDLANLERSP 540 SNQGRVQKHP ATFQCTLCPK RFTRAYNLRS HLRTHTDERP FVCTVCGKAF ARQHDRKRHE 600 GLHSGEKKFV CRGTLQSGPQ WGCGRRFARA DALGRHFRSE AGRVCIKPLL DEEAAERQRV 660 WMQEQQSQLS QQQGMMNAPQ AMLSQPQLDP LIGSFLPQAL LQQYPALAGL DWNSIPQGPP 720 PEEGDISGRS SYDASSGGEY YDEVSENEMS SYPDPSDMQH MGNLNTSSVM NPQQQPQMSF 780 VTNRGAVGAA YNPDHNHSTS DYLSDFEGR

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MDVSSHNNYD RRRSPSAGRL DHADLQHRAA ASQPLSSFAD SNFDPNPLLF DNTALGSYSN  60
PGASLDTAFS SGYQPQAQFP LTSNYTNFQQ EQQQRMPPHL TTQNSNFSDH SFVQSNGLSP  120
QDTGHFSSQG SSHVSPSSIN NEPSAFPSFD FGSTDLSQVG FDQPGSLDPT LLDGINTSGM  180
DSQVGLLDQM GPALTSRSPP LPHLTPDMNM RRHSGSPSPH TSPGFQQTAS FSSQSDNRPR  240
NLSESLDPSS AMFPPSGQGN EWSAMGAYRG AHRRTPSDNY SDISSTHNSP YLGNLDSFDA  300
NAQSSPMLNP TSDPSFANDL SMQGFTLNES QGPSQQSLFN YSPVPSPQSS QRLSAQQAAM  360
TNLASDNSYG LNVNVNGQFS QPQNNDGDMF LGTNHEPFPS LNSQQTPGGE LGLADQMSPP  420
EINIDFVPDS KNPMEPIRST HGDDTLSPPQ RTGRARSKSD SQASPRPASP GFARGRSPSL  480
QDKQSNSLSP LQNGHNSANS SRSASPARGR NGSLGSRNRS HSASDNRDYI LDLANLERSP  540
SNQGRVQKHP ATFQCTLCPK RFTRAYNLRS HLRTHTDERP FVCTVCGKAF ARQHDRKRHE  600
GLHSGEKKFV CRGTLQSGPQ WGCGRRFARA DALGRHFRSE AGRVCIKPLL DEEAAERQRV  660
WMQEQQSQLS QQQGMMNAPQ AMLSQPQLDP LIGSFLPQAL LQQYPALAGL DWNSIPQGPP  720
PEEGDISGRS SYDASSGGEY YDEVSENEMS SYPDPSDMQH MGNLNTSSVM NPQQQPQMSF  780
VTNRGAVGAA YNPDHNHSTS DYLSDFEGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	3e-09	C2H2 family protein