PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023890555.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-X1

Protein Properties

Length: 1161aa MW: 127069 Da PI: 8.1341

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023890555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.1	1.2e-05	333	350	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+HkC + CHeG C+ C XP_023890555.1 333 CGEHKCARSCHEGVCGAC 350 ****************99 PP
2	zf-NF-X1	21.7	4.5e-07	475	492	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H C+++CH+G+CppC XP_023890555.1 475 CG-HACKEICHLGNCPPCM 492 .*************6 PP
3	zf-NF-X1	18.2	5.3e-06	588	607	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C lCH+GpC+ C++ XP_023890555.1 588 CGNHLCTDLCHKGPCGACRE 607 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MEGPSSLSTT QSAAVEGNNR QRGSGRQKYI RGRAQGRGGN ASLSFRPSSV GPSSSAQAEA 60 SQNAVEGDSQ SKSRGQRGKG GKQRGQKRTV NGRQFGGQLT TQTVPPVTTP ESSQFQATAT 120 SFVPGREHFV SSGSIDLRAK RGNLPRQQSR QPEKSQAPDI ATRTHEDIDN GHYECAICTS 180 EVQRKAKVWY CHLCWTVFHL SCIKKWSGNE GSAVSRKQSD ETASRQWRCP GCNLPQDELP 240 TLYTCWCRKE TEPRAPAGIP PHSCGQSCGK ERAKRCPHAC SLTCHAGPCP PCDFMAPTQM 300 CFCGKHEVTK RCSETDYDSG WSCGKVCHEL MPCGEHKCAR SCHEGVCGAC DVLVPARCYC 360 GKDETVILCS DRMDNKTSYR TYSSGDGKLT TESWVGMFEC TKKCGRPLDC GVHVCERGCH 420 AASTDKPAHC PRSPDVVTHC SCGKTALETL TNQPRKTCLD AIPSCQLSCE KLLPCGHACK 480 EICHLGNCPP CMQKIDIKCR CGRTSSRSLC HQGGGELSLP QCPRVCRVQM SCGRHACDEH 540 CCAGERKAIE RQGSKRKQRP FSAAPRVVDD GFEAEHICTR QCGRLLKCGN HLCTDLCHKG 600 PCGACREAIF HEISCNCGRT VLQPPLPCGT TSPICRYPCG RSKPCGHPQV PHNCHQDDEA 660 CPRCPFLMEK KCLCGRKTLK NQQCWLNDVR CGEVCGKKLR CGSHFCRELC HTAGECEDAA 720 GPCKQQCGKE KKACGHPDLE HVCHAPFPCK EDQPCQSKIY ATCACQAQKQ EMKCAASKVS 780 EGNMLKTLPC NDECARLERN RRLAVALNID QSTHIEGGDH IPFSTETLNM FAEHVKWGQN 840 QEREFRVFAT SEDEKRLRFK PMQSRQRTFL HSLAEDFGLD HESMDPEPHR HVMIWKTPRF 900 VSAPNKTLAE ALRIRQAARS IAAGTNVLDS EAGTMKSKVA TSSDEPYNSF VISSPRFGLT 960 VDELQPEITA ALSTTAGLTF DIEFLPVEEV VLKAKSASLQ PADLQAVLQR IKSVLVTSIA 1020 SKGYGNAQLC VTDKSTNIIR RESDSGPGDG WSRVAAKKAA QKMTLPPPSV FGSNTFAALS 1080 GNKITFAKKK IQKPRKESVV DDWEIAETAE EEKEKDGSSG EIGIVGPRAS GGEHQQVMPN 1140 TEATLVTQPI TLDNEPSGLQ V

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MEGPSSLSTT QSAAVEGNNR QRGSGRQKYI RGRAQGRGGN ASLSFRPSSV GPSSSAQAEA  60
SQNAVEGDSQ SKSRGQRGKG GKQRGQKRTV NGRQFGGQLT TQTVPPVTTP ESSQFQATAT  120
SFVPGREHFV SSGSIDLRAK RGNLPRQQSR QPEKSQAPDI ATRTHEDIDN GHYECAICTS  180
EVQRKAKVWY CHLCWTVFHL SCIKKWSGNE GSAVSRKQSD ETASRQWRCP GCNLPQDELP  240
TLYTCWCRKE TEPRAPAGIP PHSCGQSCGK ERAKRCPHAC SLTCHAGPCP PCDFMAPTQM  300
CFCGKHEVTK RCSETDYDSG WSCGKVCHEL MPCGEHKCAR SCHEGVCGAC DVLVPARCYC  360
GKDETVILCS DRMDNKTSYR TYSSGDGKLT TESWVGMFEC TKKCGRPLDC GVHVCERGCH  420
AASTDKPAHC PRSPDVVTHC SCGKTALETL TNQPRKTCLD AIPSCQLSCE KLLPCGHACK  480
EICHLGNCPP CMQKIDIKCR CGRTSSRSLC HQGGGELSLP QCPRVCRVQM SCGRHACDEH  540
CCAGERKAIE RQGSKRKQRP FSAAPRVVDD GFEAEHICTR QCGRLLKCGN HLCTDLCHKG  600
PCGACREAIF HEISCNCGRT VLQPPLPCGT TSPICRYPCG RSKPCGHPQV PHNCHQDDEA  660
CPRCPFLMEK KCLCGRKTLK NQQCWLNDVR CGEVCGKKLR CGSHFCRELC HTAGECEDAA  720
GPCKQQCGKE KKACGHPDLE HVCHAPFPCK EDQPCQSKIY ATCACQAQKQ EMKCAASKVS  780
EGNMLKTLPC NDECARLERN RRLAVALNID QSTHIEGGDH IPFSTETLNM FAEHVKWGQN  840
QEREFRVFAT SEDEKRLRFK PMQSRQRTFL HSLAEDFGLD HESMDPEPHR HVMIWKTPRF  900
VSAPNKTLAE ALRIRQAARS IAAGTNVLDS EAGTMKSKVA TSSDEPYNSF VISSPRFGLT  960
VDELQPEITA ALSTTAGLTF DIEFLPVEEV VLKAKSASLQ PADLQAVLQR IKSVLVTSIA  1020
SKGYGNAQLC VTDKSTNIIR RESDSGPGDG WSRVAAKKAA QKMTLPPPSV FGSNTFAALS  1080
GNKITFAKKK IQKPRKESVV DDWEIAETAE EEKEKDGSSG EIGIVGPRAS GGEHQQVMPN  1140
TEATLVTQPI TLDNEPSGLQ V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	1e-129	NF-X1 family protein