PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023890452.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 668aa MW: 70997.8 Da PI: 7.8395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023890452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	259	281	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C++ F+r++nLk+H+ tH XP_023890452.1 259 HKCPYCSTDFTRHHNLKSHLLTH 281 79*******************99 PP
2	zf-C2H2	15.3	5.8e-05	287	309	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C +F+r ++LkrH ++H XP_023890452.1 287 YVCSTCQARFRRLHDLKRHSKLH 309 9******************9998 PP
3	zf-C2H2	15.2	6.2e-05	315	334	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C +Cg+ F r + L rH XP_023890452.1 315 HTCDKCGRKFARGDALARHN 334 79*****************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MADTARATTP RTEPFPPLDA GPPTTVAGSA VPLPPTINVV ADDSSLSHSI PATSHDPGAA 60 HLSAKAAKPI SSGAAALQLT GQAAMADLKR RNKQKAAEEA RQTSPNPQVE AMQTLMGGVA 120 QSRPSDGPPS DKPSEPMRRV AERITVPTIT SDEPLQASPT SLTSFGTLES NGPEAALTAT 180 AGASSNTTAN SQLAHRSDGA NHPDNTGTLA VVAEEGDKAF SYPGPPQSDQ GQSSGPSRGM 240 SLPGFGQESP KSSASNKRHK CPYCSTDFTR HHNLKSHLLT HSQEKPYVCS TCQARFRRLH 300 DLKRHSKLHT GERPHTCDKC GRKFARGDAL ARHNKGPGGC AGRRSSFPGD DDYNGEGADH 360 MDGVDYGGDE DDEDDDHGRR VSEPSRKRAH LETPQDTARE VYRQHSSTYP GSTHPRQHGS 420 SVSSMGPPQV NLHPGQGPVA SPRELSGYPD PTTAASSMSS VHYGNPGQVL NHSTMIESPK 480 PLSPGHPPDQ HRLSVGDASM SSMRNRSPSL TTQFQQTHFG RGTGGRTPPQ PTPQFGTSQQ 540 HASVLPPLQH TNPLQSRSGL QSSALMGSHG SGMLHHQQQP APPANPGGGH GSNPGSLSSH 600 GRSSGGSMRD IVGQDGDIWA YVRTLEQRFS RMQDEYELRI SRLQEEVISL KGQVSNAGSY 660 SSEMNQRY

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MADTARATTP RTEPFPPLDA GPPTTVAGSA VPLPPTINVV ADDSSLSHSI PATSHDPGAA  60
HLSAKAAKPI SSGAAALQLT GQAAMADLKR RNKQKAAEEA RQTSPNPQVE AMQTLMGGVA  120
QSRPSDGPPS DKPSEPMRRV AERITVPTIT SDEPLQASPT SLTSFGTLES NGPEAALTAT  180
AGASSNTTAN SQLAHRSDGA NHPDNTGTLA VVAEEGDKAF SYPGPPQSDQ GQSSGPSRGM  240
SLPGFGQESP KSSASNKRHK CPYCSTDFTR HHNLKSHLLT HSQEKPYVCS TCQARFRRLH  300
DLKRHSKLHT GERPHTCDKC GRKFARGDAL ARHNKGPGGC AGRRSSFPGD DDYNGEGADH  360
MDGVDYGGDE DDEDDDHGRR VSEPSRKRAH LETPQDTARE VYRQHSSTYP GSTHPRQHGS  420
SVSSMGPPQV NLHPGQGPVA SPRELSGYPD PTTAASSMSS VHYGNPGQVL NHSTMIESPK  480
PLSPGHPPDQ HRLSVGDASM SSMRNRSPSL TTQFQQTHFG RGTGGRTPPQ PTPQFGTSQQ  540
HASVLPPLQH TNPLQSRSGL QSSALMGSHG SGMLHHQQQP APPANPGGGH GSNPGSLSSH  600
GRSSGGSMRD IVGQDGDIWA YVRTLEQRFS RMQDEYELRI SRLQEEVISL KGQVSNAGSY  660
SSEMNQRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	3e-09	C2H2 family protein