PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023890120.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 283aa    MW: 31019.8 Da    PI: 8.0542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023890120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++
   XP_023890120.1  5 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfnpflSSRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGTGKWKD IQRDPEFNPF LSSRSNIDLK DKWRNMSVSA  60
GGQGPREKSR SSKAKANPDT PTTTPSSVQT SVAASVAHDT ATDPNVDDST KSLTDGKNAS  120
SYNAMIFEAL STLNEPNGLD TSKIVSFIEQ RHEVPQNFRR LLSTRLRRLV TQDKLEKVQN  180
CYKMKTDVSS GTKTPLPTPT PKQDIQPRPL QSIGYLTIGD TVEAAAEAAA CKIADAENKS  240
FVAAEAVKEA ERVSKMAEDT DSFLQLAKEI FEKCSRGEIV LMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-54MYB_related family protein