PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023889940.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 561aa MW: 60041.6 Da PI: 5.0809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023889940.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	378	426	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_023889940.1 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDMVGDKDKF ELENRNEEDP MNFAAPSPSP SVDWRFGGLV PTGNPMAVSK GSTSMVVESF 60 GPTLWDQSQT ANPQNLGGLF SDINNVQNSA STSDTLGIRK GTPAAVVSLP SIDHKTFDMG 120 WNPTSSMLNL KGGGGIFLPG NGMLPQSLSQ FPADSAFIER AARFSCFNVS GGNFSDMVNP 180 LESMGGTNYF RGGGMMQEVF GGNGQSHSQK NEVMNVDEAF KDVSMTVGEH EHEHGATGGG 240 GSPLKNVRSH DEAKQGIGVG GSGPGNDSDE AEFSTAGGQD EPSVLEGTTG GERFAGGLES 300 KKRKRSEQDT ESDLAKVGPQ QPGESAMDDT EIQQNGDQKP TATTNKSSGK HGKQGSQASD 360 PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLATVN PRLDFNVEGL LAKDILQSRA GPSTLGFSPD MPMAYPQLHS 480 SQQGLIRAGL SGLGSSSDLH RRTMNSQLTP MTGGFKEPTR LPNVWEDELH NVVQMSYGTS 540 ATPNSLDVDG SLPPGHMKVE L

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDMVGDKDKF ELENRNEEDP MNFAAPSPSP SVDWRFGGLV PTGNPMAVSK GSTSMVVESF  60
GPTLWDQSQT ANPQNLGGLF SDINNVQNSA STSDTLGIRK GTPAAVVSLP SIDHKTFDMG  120
WNPTSSMLNL KGGGGIFLPG NGMLPQSLSQ FPADSAFIER AARFSCFNVS GGNFSDMVNP  180
LESMGGTNYF RGGGMMQEVF GGNGQSHSQK NEVMNVDEAF KDVSMTVGEH EHEHGATGGG  240
GSPLKNVRSH DEAKQGIGVG GSGPGNDSDE AEFSTAGGQD EPSVLEGTTG GERFAGGLES  300
KKRKRSEQDT ESDLAKVGPQ QPGESAMDDT EIQQNGDQKP TATTNKSSGK HGKQGSQASD  360
PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNVEGL LAKDILQSRA GPSTLGFSPD MPMAYPQLHS  480
SQQGLIRAGL SGLGSSSDLH RRTMNSQLTP MTGGFKEPTR LPNVWEDELH NVVQMSYGTS  540
ATPNSLDVDG SLPPGHMKVE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-113	bHLH family protein