PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023889886.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 754aa    MW: 85107.6 Da    PI: 6.6017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023889886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.71.4e-1153817521374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla+yf+ +L+ar+a+++s++y+ l++++ s    +++l+a++l+  +s i k+s 
  XP_023889886.1 381 LRTLLINCAQAVAADDQRSASELLKQIRQHSSPFGDGNQRLAHYFADGLEARMAGTGSQIYRGLASKKLS---AADTLKAHHLLLAASSIEKMSI 472
                     6789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t N++I+  +++++rvH+iDf+i +G+QWp+L+q ++ R++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfe+n+ +ak++e+
  XP_023889886.1 473 FTSNRTIMSGTAKATRVHVIDFGILYGFQWPTLIQRISWRDGGPPKLRITGIDFPQPGfrPAERVEETGRRLANYAETFKVPFEYNA-IAKKWET 566
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++leeL+++++E l+Vn+ ++ ++l+desv+++s r+ +L+l+++++P+++++   +   n++ F++rf eal +ysalfd+le+ +pre++er+
  XP_023889886.1 567 IQLEELKIDRDEFLVVNCLYRAKNLPDESVAVDSSRNIFLNLIRKINPDIFIHGVVNGAFNAPFFVTRFREALFHYSALFDMLETIVPREDQERM 661
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+e++gr++ nv+aceg er+er et+++W+ r  +aGF ++pl+ ++ + a   +r+ + + + ++e+  ++v+gWk+r ++++S+W+
  XP_023889886.1 662 LLEKEVFGRQALNVIACEGWERVERPETYKQWQVRNLRAGFAQLPLDRQILEMAIDRVRTSYHKDFVIHEDGRWMVQGWKGRIIYALSCWK 752
                     **************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    
MDSHFSGFSG SNNGVQFGNP SFSALSNENL VARPRFDNAL LDHNVRGFHF LESDQTPSHI  60
APTSSVNERE DSPEDCDFSD AVLNYINQIL MEEEMEDKTC MLQESLELQA AEKSFYDVLG  120
KKYPPSPEHR LTYINQNDGS SNDHHHVYYT NYYPSSSFFG DNSLIQSQGE EYIISQLQSH  180
PLYRNPQSSY SSSNSVISSS VDGLVDSPSS TLQVPDSNFE SQSVWQFRKG VEEANKFLPS  240
GSQLYVNLEA NGLSYMEPRA RIGNLEVKVE GKDEGEYSPS GSRGKKNPYR EDGDIEVERS  300
SKLAAVFTES ILRSDLFDII LLHSAGAGRE ALKARREALA ARHEALQNVK SKIAPLNGKL  360
KGTNSGRGLA KKQRGKEVVD LRTLLINCAQ AVAADDQRSA SELLKQIRQH SSPFGDGNQR  420
LAHYFADGLE ARMAGTGSQI YRGLASKKLS AADTLKAHHL LLAASSIEKM SIFTSNRTIM  480
SGTAKATRVH VIDFGILYGF QWPTLIQRIS WRDGGPPKLR ITGIDFPQPG FRPAERVEET  540
GRRLANYAET FKVPFEYNAI AKKWETIQLE ELKIDRDEFL VVNCLYRAKN LPDESVAVDS  600
SRNIFLNLIR KINPDIFIHG VVNGAFNAPF FVTRFREALF HYSALFDMLE TIVPREDQER  660
MLLEKEVFGR QALNVIACEG WERVERPETY KQWQVRNLRA GFAQLPLDRQ ILEMAIDRVR  720
TSYHKDFVIH EDGRWMVQGW KGRIIYALSC WKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein