PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023889635.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family C3H
Protein Properties Length: 387aa    MW: 43800.8 Da    PI: 7.5903
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023889635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06128146524
                     --SGGGGTS--TTTTT-SS- CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFa 24 
                      C+ ++r G C++Gd+C Fa
  XP_023889635.1 128 VCPEYRR-GSCSRGDSCEFA 146
                     7******.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MSSICAEQQH NLHTSHQLIS SKKSLKTIDI PPRKLLSRRL IISEPDMYFS DDTLFQKFLS  60
NNNVGGDNLD DSDSDYDPYS SDHFRMYEFK VRRCTRCRSH DWTDCPFAHP GEKARRRDPR  120
RFHYSGQVCP EYRRGSCSRG DSCEFAQGVF ECWLHPARYR TEACKDGKNC KRKVCFFAHT  180
PRQLRVLPLN SHHSSPELAC KKKLTSNHCC LFCRCANSSP TSTLLGMSHL SPPLSPPLSP  240
GNHRSINGFS PISRYADRFV SCESSGGMHA QMNNHGVQSY KDALTELMSS LEGMNFSETS  300
SPLSAKSPNV PWLDVSFNNI EDQQQFILSP STPNPPSFRS ANFFSGDCSS KSFADETNNN  360
NEEYTQVNEN GRSCSDPDLG WVNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.16e-89C3H family protein