PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023888979.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 291aa MW: 31536.2 Da PI: 7.7817

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023888979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H XP_023888979.1 123 FQCKTCDRCFPSFQALGGHRASH 145 89**********99999998887 PP
2	zf-C2H2	15.6	4.7e-05	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs+ L H+r+H XP_023888979.1 197 HECSICGTEFSSGQALGGHMRRH 219 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MMMEAQEEVM GYKDHTQIIK GKRTKRQRLP SPLRLTMATT SSSGGGEGSS TGGVRIYDYS 60 GGLERAVASP TTSVEFAEST EEEDMANCLI LLAQGQSRKV SSSEPVATTN SGKAAAAAGS 120 HAFQCKTCDR CFPSFQALGG HRASHKKLKA NTEEKKLVLV VDEEDDHRFN STASTTLSLQ 180 TANRVQCNSN NNKAKVHECS ICGTEFSSGQ ALGGHMRRHR TFITPTATTM SVGASSPDQS 240 LEAKKQRNDI VQLDLNLPAP EDDQRADSKF SFMSKERVLV FSASSLVDCH Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-54	C2H2 family protein