PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023888470.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36698.5 Da    PI: 4.4703
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023888470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1887139456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  +q++ Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa++k
  XP_023888470.1  87 KRRLAVDQVQFLEKNFEVENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARYK 139
                     4568889*********************************************9 PP
2HD-ZIP_I/II128.72.3e-4186177293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+ +qv++LE++Fe e+kLep+rK +la+eLglqprqva+WFqnrRAR+ktkqlEkdy++Lk++yd+lk + + L ke+e+Lr+e+++
  XP_023888470.1  86 KKRRLAVDQVQFLEKNFEVENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARYKTKQLEKDYDSLKTSYDKLKIDYDDLLKEKESLRSEINS 177
                     9**************************************************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MAGSKVYGGA SNMSVLLQNE RLPCSSEVPE PLWIPSSEPS FHASKSIANF ENVNGRDTTA  60
RPFFQQLDKD ENVDEDYDGC FHQPGKKRRL AVDQVQFLEK NFEVENKLEP DRKIQLAKEL  120
GLQPRQVAIW FQNRRARYKT KQLEKDYDSL KTSYDKLKID YDDLLKEKES LRSEINSLKD  180
KLLIREKGKE NVEPLDAIKS SNTDPTQEPI SNAVSENVSN VPILVCKQED ASSAKSDVFD  240
SDSPHYTDGN HSSLLEPADS SHVCEPDQSD FSQDEEDNHS KILLPQTYFP KIEDGYNDDQ  300
PVSYCNFVIP VEDQPFCFWN Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARYKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-38HD-ZIP family protein