PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023888409.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 252aa    MW: 28369.2 Da    PI: 10.7207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023888409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.4e-1399144247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+ E++ ++ + ++lG+g+W+ I+r +  ++t+ q+ s+ qky
   XP_023888409.1  99 MPWTEKEHQMFLVGLEKLGKGDWRGISRNFVPTKTPTQVASHAQKY 144
                      69*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MARKCSHCGN MGHNSRTCNT RKRSAKFRLF GVQLDISSSS FSPSFVMRKS FSMDCLPSSS  60
ATSSSSSSLL AMDEKFDQMC NGYVSEGLIA RNQERKKGMP WTEKEHQMFL VGLEKLGKGD  120
WRGISRNFVP TKTPTQVASH AQKYFLRHNN HNKRKRRPSL FDLGRNKFRP QLVNSCVFKP  180
SSEAASVSFE FQSKRTNSKV LDHGKVGYSE WPSSTHYSMP ISFHNNIVES LPTHAASGLT  240
TKLTLQTSKC NP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158KRKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-48MYB_related family protein