PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023887572.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 506aa MW: 56086.3 Da PI: 5.7651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023887572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.9e-13	361	407	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_023887572.1 361 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 407 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MGDKFWVNEE DRAMVESVLG TEACEFLVSS ASENVLSDLV TPRSELGVQR GLCQLVEGSC 60 WNYAIFWRVV SLKSGGSALI WGDGHCRDPK GAGAGDRNSR GDGSLEGVEK KEQVKKQVLQ 120 KLQACFGGLD EDNFAARLDG VLDVEMLYLS SMYFTFRCDL PCRLGESYMS GKSIWASDMS 180 SSLNNYQQRS FLARSAGFQT VVFVPVKCGV VEFGSIKSIP EEQTILDMVK TVFGESNYVQ 240 SKVFPKIFGH ELSLAGTKSR SVNINFSPKV EDDTGFASDT FEVQAIGTNH VYGNSSNGCQ 300 SDDNEAKLFP QLNQMVVGGF SAQTRVSSLE LSKDDSSPQP DERKPRKRGR KPANGREEPL 360 NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQMKI RVLETEKELE 420 KNKHKQLPAS EIDFQERPED SVVRMSCPLD AHPVSGVIKM FREHQIVAQE SSVSTENDKV 480 VHTFSVQTQG GAAEQLKEKL VGALSK

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MGDKFWVNEE DRAMVESVLG TEACEFLVSS ASENVLSDLV TPRSELGVQR GLCQLVEGSC  60
WNYAIFWRVV SLKSGGSALI WGDGHCRDPK GAGAGDRNSR GDGSLEGVEK KEQVKKQVLQ  120
KLQACFGGLD EDNFAARLDG VLDVEMLYLS SMYFTFRCDL PCRLGESYMS GKSIWASDMS  180
SSLNNYQQRS FLARSAGFQT VVFVPVKCGV VEFGSIKSIP EEQTILDMVK TVFGESNYVQ  240
SKVFPKIFGH ELSLAGTKSR SVNINFSPKV EDDTGFASDT FEVQAIGTNH VYGNSSNGCQ  300
SDDNEAKLFP QLNQMVVGGF SAQTRVSSLE LSKDDSSPQP DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQMKI RVLETEKELE  420
KNKHKQLPAS EIDFQERPED SVVRMSCPLD AHPVSGVIKM FREHQIVAQE SSVSTENDKV  480
VHTFSVQTQG GAAEQLKEKL VGALSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	351	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-180	bHLH family protein