PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023887458.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family B3
Protein Properties Length: 361aa    MW: 40772.9 Da    PI: 9.783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023887458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1955152199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ v+ ps+v  ++ l ++ +fae++++k  ++  ++l++ +  +W+vk++  k + +  +++GWkeF+++n Lk+gD+++F+l++  e  ++v 
  XP_023887458.1  55 FKVVMQPSYVYPRNSLNISSSFAEKYMSK-MSGEFVILRSFDRGTWSVKFSNYKAQTKSEFRQGWKEFARDNSLKVGDVCIFELINGIEVAFKVA 148
                     6667899*******************766.56679***************77666667889***********************98844448999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  XP_023887458.1 149 IFRA 152
                     9885 PP
2B344.13.8e-14258358498
                     E-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     v +++++ ++g ++lp + + ++         gg+   +++l++     + W vkl y      +s+++ l++GW+ F+ +n L++gD++vF+l+
  XP_023887458.1 258 VIMQPSYISNGHMSLPHSII-NYllrkgfitkGGV--LTVKLQV---VDQLWPVKL-YayegMYQSSQCKLSAGWSAFAMENTLQVGDVCVFELI 345
                     556788888888******99.67799864443333..3333333...4599*****.3367767777799************************* PP

                     SSSEE..EEEEE- CS
              B3  86 grsefelvvkvfr 98 
                      r++  l+v++fr
  XP_023887458.1 346 MRDDVVLKVHIFR 358
                     9999999***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MNAGVSFTRR ESKEECSGAT KRCPKSEVIE RTLSASEKDR AFQRVSAFES KNPFFKVVMQ  60
PSYVYPRNSL NISSSFAEKY MSKMSGEFVI LRSFDRGTWS VKFSNYKAQT KSEFRQGWKE  120
FARDNSLKVG DVCIFELING IEVAFKVAIF RAANDIDCPL SNAHGVGGNQ VGRKSSPLVK  180
PKSDCYLDDE SFSHDQCPLK DGGVGMSTNR RRLKAKALVK NHEYKALEKK QELMTTNGKT  240
KNLVRANAFK SENPLFMVIM QPSYISNGHM SLPHSIINYL LRKGFITKGG VLTVKLQVVD  300
QLWPVKLYAY EGMYQSSQCK LSAGWSAFAM ENTLQVGDVC VFELIMRDDV VLKVHIFRCL  360
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-23B3 family protein