PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023886764.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 612aa MW: 67266.4 Da PI: 7.1491

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023886764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.7e-08	499	547	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_023886764.1 499 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFssySYRTSVDLKDKWRNLL 547 7*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
METVVGVEGN DEGKVEETGV EKSSSALSSP KQIADPVVYK LVRVEGDGRL VPATDDELME 60 VEDFLEDDKT EMHDVADSGQ TVGHISDEGA SSEKTQLEST EGLLKLENSE ADAGKLNARP 120 EEIIPSSAPI LNDNDINQSG TTVECPKPLE KTIENVSSTS AIPTSSSSKP DFSKLNGEIC 180 LDKLSIRELH EVFKATFGRE TTVKDKQWLK RRIAMGLTNS CDVSTTTFTI KDNKLVTKGE 240 EECNKNVDGS FTQDPEVGAT DVNSKGSPAS HGSQMEDHQT ASGKKLRSHS LELDSGSEHL 300 HIEQGAAKRI RKPTRRYIEE LSEVESKDYS QRLITSPKNA VPGQTSPKSS VRPVRNVPSE 360 GRIVVTRLDS LGGSGVQVPY VSRVRRSRPR KNVMALMKFN PSSMGMAAKL VKKALGVHNS 420 QTDDNKRDKV LKKRSSAEQI QQPFFSEVEK DRQRSVMGRF ERGENLGLTQ ADSSGDNSDD 480 NVVTVPTAKG GMRRKHHRAW TLVEVMKLVE GVSKCGAGRW SEIKRLAFSS YSYRTSVDLK 540 DKWRNLLKAS FAQTPPDDGL NSRKPTSMPI PESILLQVRE LAEMNAQVPT SISSTKPIMG 600 SRNLHETRSG YL

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

METVVGVEGN DEGKVEETGV EKSSSALSSP KQIADPVVYK LVRVEGDGRL VPATDDELME  60
VEDFLEDDKT EMHDVADSGQ TVGHISDEGA SSEKTQLEST EGLLKLENSE ADAGKLNARP  120
EEIIPSSAPI LNDNDINQSG TTVECPKPLE KTIENVSSTS AIPTSSSSKP DFSKLNGEIC  180
LDKLSIRELH EVFKATFGRE TTVKDKQWLK RRIAMGLTNS CDVSTTTFTI KDNKLVTKGE  240
EECNKNVDGS FTQDPEVGAT DVNSKGSPAS HGSQMEDHQT ASGKKLRSHS LELDSGSEHL  300
HIEQGAAKRI RKPTRRYIEE LSEVESKDYS QRLITSPKNA VPGQTSPKSS VRPVRNVPSE  360
GRIVVTRLDS LGGSGVQVPY VSRVRRSRPR KNVMALMKFN PSSMGMAAKL VKKALGVHNS  420
QTDDNKRDKV LKKRSSAEQI QQPFFSEVEK DRQRSVMGRF ERGENLGLTQ ADSSGDNSDD  480
NVVTVPTAKG GMRRKHHRAW TLVEVMKLVE GVSKCGAGRW SEIKRLAFSS YSYRTSVDLK  540
DKWRNLLKAS FAQTPPDDGL NSRKPTSMPI PESILLQVRE LAEMNAQVPT SISSTKPIMG  600
SRNLHETRSG YL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	385	391	RRSRPRK
2	428	434	DKVLKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-111	MYB_related family protein