PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023886753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25649.5 Da PI: 6.0652 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.7 | 1.1e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_023886753.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101 7*************************89******************************************************************* PP DUF260 95 allke 99 a+lke XP_023886753.1 102 ASLKE 106 99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD 60 RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKELQAA QSFLNGSAST 120 NPNEKYYGKP SHPQDVQSWF QSEISNMMQQ FNPNINNNAS TMPYQENMSM SNSMGNFGNS 180 NIPEEINASY GCSYEEASHS MSSLDMNIYD RQWSLQETDD LQSAAFGYIQ HS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-58 | LBD family protein |